Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   QIY60_RS18260 Genome accession   NZ_CP124863
Coordinates   4131990..4134206 (+) Length   738 a.a.
NCBI ID   WP_283143413.1    Uniprot ID   -
Organism   Streptomyces sp. BPTC-684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4126990..4139206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIY60_RS18240 (QIY60_18240) - 4127793..4128956 (-) 1164 WP_283143409.1 Gfo/Idh/MocA family oxidoreductase -
  QIY60_RS18245 (QIY60_18245) - 4129174..4130247 (+) 1074 WP_283143410.1 LacI family DNA-binding transcriptional regulator -
  QIY60_RS18250 (QIY60_18250) - 4130440..4131243 (+) 804 WP_283143411.1 SDR family oxidoreductase -
  QIY60_RS18255 (QIY60_18255) - 4131288..4131701 (-) 414 WP_283143412.1 DUF937 domain-containing protein -
  QIY60_RS18260 (QIY60_18260) recD/recD2/recDB 4131990..4134206 (+) 2217 WP_283143413.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QIY60_RS18265 (QIY60_18265) - 4134386..4135684 (+) 1299 WP_283143414.1 citrate synthase -
  QIY60_RS18270 (QIY60_18270) - 4136088..4138388 (-) 2301 WP_283143415.1 heavy metal translocating P-type ATPase -
  QIY60_RS18275 (QIY60_18275) - 4138466..4138777 (-) 312 WP_283143416.1 heavy-metal-associated domain-containing protein -
  QIY60_RS18280 (QIY60_18280) - 4138908..4139111 (-) 204 WP_283143417.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79530.03 Da        Isoelectric Point: 6.8341

>NTDB_id=761681 QIY60_RS18260 WP_283143413.1 4131990..4134206(+) (recD/recD2/recDB) [Streptomyces sp. BPTC-684]
MSNLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPRIADRIVEHFGTDTLDIIEQQPKRLVEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQL
IADSVKLLQVDTGLVIDCLGELVAEEGVVREPVPGPEGGAERVNAVYLVPFHRAELSLAAQVVRLLRTGEDRMPGFQDVD
WDRALSWLAARTGAELAPEQQAAVRLALTSKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLAELTGA
EASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLMVGDVDQLPSVGAGEVLRDLLAE
GGPVPRVRLTRIFRQAQQSGVVTNAHRINSGVPPLTQGLSDFFHFVEEETEDAGRLTVDVAARRIPAKFGLDPRRDIQVL
APMHRGPAGAGNLNGLLQQAITPARPDLPEKRLGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTALDPDEQRLTVLT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRARKLVVLVGSRKAIGQAVRTVS
AGRRFTALAHRLSGGALV

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=761681 QIY60_RS18260 WP_283143413.1 4131990..4134206(+) (recD/recD2/recDB) [Streptomyces sp. BPTC-684]
ATGTCCAATCTCGCGGTGCTCGAAGGGGTCCTTGAGCGGATCACGTACGCCAACGAGGAGAACGGCTACACGGTGGCCCG
GGTCGACACCGGGCGCGGCGGTGGCGATCTCCTCACGGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCGCTGC
GGATGGAGGGCCGCTGGGGCTCGCACCCGCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACGACCGTCCTGCCCGCC
ACCATCCAGGGCATCCGGCGCTACCTCGGCTCGGGCCTGATCAAGGGCATCGGCCCCCGCATCGCCGACCGCATCGTGGA
GCACTTCGGCACGGACACGCTCGACATCATCGAGCAGCAGCCCAAGCGCCTCGTGGAGGTGCCCGGCCTCGGCCCCAAGC
GCACCAAGCTCATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAAGTGATGGTCTTCCTCCAGGGAGTCGGCGTC
TCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTGGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCGG
AGCGAGTGAAAGCGGGCCTCCAGTACGCCCTGTCCCAGTCCACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAGCTC
ATCGCGGACTCGGTGAAGCTCCTCCAGGTCGACACGGGCCTGGTGATCGACTGCCTGGGCGAGCTGGTCGCCGAGGAGGG
CGTCGTCCGCGAGCCGGTCCCGGGGCCCGAGGGCGGGGCCGAGCGGGTCAACGCCGTCTATCTGGTCCCCTTCCACCGCG
CCGAGCTCTCCCTCGCCGCCCAGGTGGTCCGGCTGCTGCGCACCGGGGAGGACCGGATGCCGGGCTTCCAGGACGTGGAC
TGGGACCGGGCCCTGTCCTGGCTCGCCGCGCGCACCGGTGCCGAGCTCGCCCCCGAGCAGCAGGCAGCCGTGCGGCTCGC
CCTGACCAGCAAGGTCGCGGTGCTCACCGGCGGTCCCGGCTGCGGCAAGTCCTTCACCGTGCGGTCGGTGGTCGAGCTCG
CCCGGGCCAAGAAGGCCAAGGTGGTGCTCGCCGCGCCCACCGGCCGCGCCGCCAAGCGGCTCGCCGAGCTCACCGGCGCC
GAAGCGTCGACGGTGCACCGCCTGCTGGAGCTGAAACCGGGCGGCGACGCGGCGTACGACAAGGACCGCCCGCTCGACGC
CGACCTGGTGGTGGTCGACGAGGCCTCGATGCTCGACCTGCTGCTCGCCAACAAGCTGGTGAAGGCGGTCGCCCCGGGCG
CGCACCTGCTGATGGTCGGGGACGTGGACCAGCTGCCCTCGGTCGGCGCCGGCGAGGTGCTGCGCGATCTGCTCGCCGAG
GGCGGCCCGGTGCCGAGGGTCCGCCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTCACCAACGCCCACCG
CATCAATTCCGGCGTCCCGCCGCTCACCCAGGGCCTCAGCGACTTCTTCCACTTCGTGGAGGAGGAGACCGAGGACGCCG
GGCGGCTCACGGTGGACGTGGCGGCGCGGCGCATCCCCGCGAAGTTCGGCCTCGACCCCCGGCGCGACATCCAGGTGCTC
GCCCCGATGCACCGCGGCCCGGCGGGCGCGGGCAACCTCAACGGCCTCCTCCAGCAGGCCATCACCCCGGCCCGCCCCGA
CCTGCCGGAGAAGCGGCTCGGCGGCAGGGTGTTCCGGGTGGGCGACAAGGTCACCCAGATCCGGAACAACTACGAGAAGG
GCGAGAACGGTGTCTTCAACGGCACCGTCGGCGTGGTGACCGCACTCGACCCGGACGAACAGCGGCTGACGGTGCTGACG
GACGAGGACGAGGAAGTGCCGTACGACTTCGACGAACTGGACGAGCTGGCCCATGCGTACGCGGTGACGATCCACCGCTC
CCAGGGAAGTGAATACCCGGCGGTGGTGATCCCCGTCACCACCGGCGCCTGGATGATGCTCCAGCGGAACCTGCTCTACA
CGGCGGTGACCCGCGCCAGAAAACTTGTCGTACTGGTCGGGTCCCGCAAGGCGATCGGCCAGGCAGTGCGTACGGTTTCC
GCAGGCAGACGCTTTACCGCACTCGCTCACCGGCTGTCAGGGGGCGCTTTGGTGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

AAA domain (AAA_30)

(335-514)

Helix-hairpin-helix domain (HHH_5)

(94-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.202

100

0.366