Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QLF90_RS09040 Genome accession   NZ_CP124854
Coordinates   1847862..1848635 (-) Length   257 a.a.
NCBI ID   WP_410530087.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED86     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842862..1853635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLF90_RS09005 (QLF90_09010) - 1843115..1843885 (-) 771 WP_000473705.1 isoprenyl transferase -
  QLF90_RS09010 (QLF90_09015) frr 1844258..1844812 (-) 555 WP_001280006.1 ribosome recycling factor -
  QLF90_RS09015 (QLF90_09020) pyrH 1844831..1845553 (-) 723 WP_000057330.1 UMP kinase -
  QLF90_RS09020 (QLF90_09025) tsf 1845690..1846571 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QLF90_RS09025 (QLF90_09030) - 1846606..1846719 (-) 114 WP_001791405.1 hypothetical protein -
  QLF90_RS09030 (QLF90_09035) rpsB 1846753..1847520 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QLF90_RS09035 (QLF90_09040) - 1847719..1847811 (-) 93 WP_031788481.1 hypothetical protein -
  QLF90_RS09040 (QLF90_09045) codY 1847862..1848635 (-) 774 WP_410530087.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QLF90_RS09045 (QLF90_09050) hslU 1848660..1850063 (-) 1404 WP_000379051.1 ATP-dependent protease ATPase subunit HslU -
  QLF90_RS09050 (QLF90_09055) hslV 1850129..1850674 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QLF90_RS09055 (QLF90_09060) xerC 1850671..1851567 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  QLF90_RS09060 (QLF90_09065) trmFO 1851985..1853292 (-) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28737.10 Da        Isoelectric Point: 6.0680

>NTDB_id=761609 QLF90_RS09040 WP_410530087.1 1847862..1848635(-) (codY) [Staphylococcus aureus strain ED86]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQILEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=761609 QLF90_RS09040 WP_410530087.1 1847862..1848635(-) (codY) [Staphylococcus aureus strain ED86]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATCTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428