Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   LDM86_RS00925 Genome accession   NZ_AP024962
Coordinates   189482..189748 (+) Length   88 a.a.
NCBI ID   WP_001173705.1    Uniprot ID   A0A8J3FT93
Organism   Helicobacter pylori strain #3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184482..194748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM86_RS00900 - 186561..187338 (+) 778 Protein_175 hypothetical protein -
  LDM86_RS00905 (OHP003_01890) - 187358..187651 (+) 294 WP_154403551.1 hypothetical protein -
  LDM86_RS07680 - 187658..189181 (+) 1524 Protein_177 hypothetical protein -
  LDM86_RS07685 (OHP003_01920) - 189178..189481 (+) 304 Protein_178 virB2 type IV secretion protein -
  LDM86_RS00925 (OHP003_01930) comB3 189482..189748 (+) 267 WP_001173705.1 hypothetical protein Machinery gene
  LDM86_RS07690 - 189795..192163 (+) 2369 Protein_180 VirB4 family type IV secretion/conjugal transfer ATPase -
  LDM86_RS00940 - 192166..193786 (+) 1621 Protein_181 type IA DNA topoisomerase -
  LDM86_RS00945 - 193752..193928 (-) 177 Protein_182 DUF1104 domain-containing protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10162.98 Da        Isoelectric Point: 4.8782

>NTDB_id=76126 LDM86_RS00925 WP_001173705.1 189482..189748(+) (comB3) [Helicobacter pylori strain #3]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=76126 LDM86_RS00925 WP_001173705.1 189482..189748(+) (comB3) [Helicobacter pylori strain #3]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8J3FT93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398