Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OUY06_RS06125 Genome accession   NZ_CP113247
Coordinates   1216198..1216905 (-) Length   235 a.a.
NCBI ID   WP_226474265.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1211198..1221905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS06100 rpsO 1211493..1211762 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  OUY06_RS06105 rpsT 1212041..1212295 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  OUY06_RS06110 holA 1212363..1213391 (-) 1029 WP_025015735.1 DNA polymerase III subunit delta -
  OUY06_RS06115 comEC 1213388..1215454 (-) 2067 WP_231953244.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OUY06_RS06120 - 1215652..1216140 (-) 489 WP_011374770.1 ComE operon protein 2 -
  OUY06_RS06125 comEA 1216198..1216905 (-) 708 WP_226474265.1 helix-hairpin-helix domain-containing protein Machinery gene
  OUY06_RS06130 - 1216979..1218025 (-) 1047 WP_035145546.1 SepM family pheromone-processing serine protease -
  OUY06_RS06135 coaD 1218027..1218524 (-) 498 WP_025015732.1 pantetheine-phosphate adenylyltransferase -
  OUY06_RS06140 rsmD 1218537..1219091 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OUY06_RS06145 - 1219096..1219386 (-) 291 WP_016265218.1 YlbG family protein -
  OUY06_RS06150 - 1219410..1220498 (-) 1089 WP_278319725.1 CAP-associated domain-containing protein -
  OUY06_RS06155 - 1220509..1221696 (-) 1188 WP_025015730.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26122.75 Da        Isoelectric Point: 9.7683

>NTDB_id=761177 OUY06_RS06125 WP_226474265.1 1216198..1216905(-) (comEA) [Latilactobacillus sakei strain CNSC001WB]
MMWQDYWQRYRRFWWVPCLVLLGIITGGFYWHQTQQKQKVTHNEQLLATSASKIKPATKKTHQAATKKKGGFVDIKGAVA
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTPEQASTG
TSANASSASDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=761177 OUY06_RS06125 WP_226474265.1 1216198..1216905(-) (comEA) [Latilactobacillus sakei strain CNSC001WB]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCACGGG
TGGCTTTTATTGGCATCAAACGCAACAAAAACAAAAAGTAACGCATAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
TAAAACCTGCTACTAAGAAAACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGTGCTGTGGCT
TATCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGCCCAAAAATTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATTGCAACGACCAGTGAGCGTACGCCAGAACAAGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCGCGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

97.021

100

0.97