Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OOK74_RS10650 Genome accession   NZ_CP113241
Coordinates   2323921..2324631 (+) Length   236 a.a.
NCBI ID   WP_278182772.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2318921..2329631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS10630 greB 2319345..2319827 (-) 483 WP_278182769.1 transcription elongation factor GreB -
  OOK74_RS10635 - 2320087..2322420 (+) 2334 WP_278182770.1 Tex family protein -
  OOK74_RS10640 - 2322510..2322980 (-) 471 WP_278182771.1 ATP-dependent Lon protease -
  OOK74_RS10645 bioH 2323064..2323834 (-) 771 WP_278183269.1 pimeloyl-ACP methyl ester esterase BioH -
  OOK74_RS10650 comF 2323921..2324631 (+) 711 WP_278182772.1 ComF family protein Machinery gene
  OOK74_RS10655 nfuA 2324718..2325305 (+) 588 WP_274722551.1 Fe-S biogenesis protein NfuA -
  OOK74_RS10660 nudE 2325431..2325994 (+) 564 WP_277207009.1 ADP compounds hydrolase NudE -
  OOK74_RS10665 cysQ 2326128..2326967 (+) 840 WP_278182773.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OOK74_RS10670 - 2327042..2327800 (-) 759 WP_278182774.1 type II secretion system protein N -
  OOK74_RS10675 gspM 2327802..2328311 (-) 510 WP_278182775.1 type II secretion system protein GspM -
  OOK74_RS10680 gspL 2328321..2329532 (-) 1212 WP_278182776.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26754.05 Da        Isoelectric Point: 8.9714

>NTDB_id=761119 OOK74_RS10650 WP_278182772.1 2323921..2324631(+) (comF) [Vibrio sp. gvc]
MLIDWLRKTTALQQMAQCPLCRLALDTPNPAGICTACQAWLAHGARCQRCGLPSLIAVEQCGQCLRQPPAWHTLICVGDY
RFPLSDAVHQLKYQRQFWQAPRLAQLLAAQIEQPAPLLCSVPLHWRRRWQRGFNQSDLLARALARTLATDYDHQLFSRRR
ATPQQQGLSKTERLNNLQDAFQLNHLPRAAHVAIVDDVVTTGSTLRHLCALLLAAGVQRIDIYCLCRTPEPKERQP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=761119 OOK74_RS10650 WP_278182772.1 2323921..2324631(+) (comF) [Vibrio sp. gvc]
ATGTTAATCGATTGGCTTAGAAAAACCACTGCGCTACAACAGATGGCACAATGCCCACTGTGTCGCTTGGCACTCGATAC
TCCTAATCCAGCGGGTATTTGCACCGCTTGCCAAGCATGGTTGGCACATGGTGCACGCTGTCAGCGCTGCGGCTTACCCA
GTTTAATCGCGGTCGAACAGTGTGGACAATGCCTACGCCAGCCGCCAGCGTGGCACACACTGATCTGCGTGGGCGATTAT
CGTTTTCCGCTGAGCGATGCGGTACACCAACTCAAATATCAGCGCCAGTTTTGGCAAGCACCGCGCCTCGCTCAGTTGCT
GGCCGCCCAGATAGAGCAACCAGCACCGTTATTGTGCAGCGTACCACTGCATTGGCGACGACGCTGGCAGCGCGGCTTTA
ATCAAAGTGATCTGCTGGCGCGAGCCTTAGCCCGCACTTTAGCCACCGACTATGACCACCAACTGTTTAGCCGCCGCCGA
GCCACACCGCAACAGCAAGGGCTTAGCAAAACTGAGCGCCTCAACAATCTGCAAGATGCATTTCAGCTTAATCATCTGCC
ACGCGCAGCTCATGTGGCAATTGTCGATGATGTGGTGACCACGGGCAGTACCCTTCGCCATTTATGTGCGTTACTGCTTG
CTGCTGGGGTGCAAAGGATTGATATTTACTGCCTATGCCGCACTCCCGAGCCAAAAGAGCGCCAACCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

76.395

98.729

0.754
  comF Vibrio campbellii strain DS40M4

48.43

94.492

0.458