Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QKA52_RS28090 Genome accession   NZ_CP124667
Coordinates   6011287..6011883 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 2021CK-01315     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6006287..6016883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA52_RS28070 (QKA52_28070) aroK 6007418..6007936 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QKA52_RS28075 (QKA52_28075) pilQ 6007948..6010092 (-) 2145 WP_033998208.1 type 4a pilus secretin PilQ Machinery gene
  QKA52_RS28080 (QKA52_28080) comL/pilP 6010146..6010670 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QKA52_RS28085 (QKA52_28085) pilO 6010667..6011290 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QKA52_RS28090 (QKA52_28090) pilN 6011287..6011883 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QKA52_RS28095 (QKA52_28095) pilM 6011883..6012947 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QKA52_RS28100 (QKA52_28100) - 6013132..6015603 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=760898 QKA52_RS28090 WP_003095839.1 6011287..6011883(-) (pilN) [Pseudomonas aeruginosa strain 2021CK-01315]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=760898 QKA52_RS28090 WP_003095839.1 6011287..6011883(-) (pilN) [Pseudomonas aeruginosa strain 2021CK-01315]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369