Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QKA52_RS25525 Genome accession   NZ_CP124667
Coordinates   5436702..5437127 (+) Length   141 a.a.
NCBI ID   WP_282414025.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01315     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5431702..5442127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA52_RS25510 (QKA52_25510) pilX 5432266..5432853 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QKA52_RS25515 (QKA52_25515) pilY1 5432865..5436356 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  QKA52_RS25520 (QKA52_25520) pilY2 5436358..5436705 (+) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  QKA52_RS25525 (QKA52_25525) comF 5436702..5437127 (+) 426 WP_282414025.1 type 4a pilus minor pilin PilE Machinery gene
  QKA52_RS25530 (QKA52_25530) ispH 5437174..5438118 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QKA52_RS25535 (QKA52_25535) fkpB 5438204..5438644 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QKA52_RS25540 (QKA52_25540) lspA 5438637..5439146 (-) 510 WP_003110420.1 signal peptidase II -
  QKA52_RS25545 (QKA52_25545) ileS 5439139..5441970 (-) 2832 WP_257680085.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15337.34 Da        Isoelectric Point: 9.8393

>NTDB_id=760890 QKA52_RS25525 WP_282414025.1 5436702..5437127(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01315]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLDMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=760890 QKA52_RS25525 WP_282414025.1 5436702..5437127(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01315]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGACATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376