Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QJ960_RS25025 Genome accession   NZ_CP124664
Coordinates   5369711..5370136 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 2021CK-01256     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5364711..5375136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ960_RS25010 (QJ960_25010) pilX 5365275..5365862 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QJ960_RS25015 (QJ960_25015) pilY1 5365874..5369365 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  QJ960_RS25020 (QJ960_25020) pilY2 5369367..5369714 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  QJ960_RS25025 (QJ960_25025) comF 5369711..5370136 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QJ960_RS25030 (QJ960_25030) ispH 5370183..5371127 (-) 945 WP_023090847.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QJ960_RS25035 (QJ960_25035) fkpB 5371213..5371653 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QJ960_RS25040 (QJ960_25040) lspA 5371646..5372155 (-) 510 WP_003102615.1 signal peptidase II -
  QJ960_RS25045 (QJ960_25045) ileS 5372148..5374979 (-) 2832 WP_034048283.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=760597 QJ960_RS25025 WP_003094721.1 5369711..5370136(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01256]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=760597 QJ960_RS25025 WP_003094721.1 5369711..5370136(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01256]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383