Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QJ982_RS27275 Genome accession   NZ_CP124663
Coordinates   5887420..5887944 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2021CK-01227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5882420..5892944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ982_RS27260 (QJ982_27260) aroB 5883536..5884642 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  QJ982_RS27265 (QJ982_27265) aroK 5884692..5885210 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QJ982_RS27270 (QJ982_27270) pilQ 5885222..5887366 (-) 2145 WP_031686163.1 type 4a pilus secretin PilQ Machinery gene
  QJ982_RS27275 (QJ982_27275) comL/pilP 5887420..5887944 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QJ982_RS27280 (QJ982_27280) pilO 5887941..5888564 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QJ982_RS27285 (QJ982_27285) pilN 5888561..5889157 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QJ982_RS27290 (QJ982_27290) pilM 5889157..5890221 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QJ982_RS27295 (QJ982_27295) - 5890406..5892877 (+) 2472 WP_031686164.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=760501 QJ982_RS27275 WP_003095836.1 5887420..5887944(-) (comL/pilP) [Pseudomonas aeruginosa strain 2021CK-01227]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=760501 QJ982_RS27275 WP_003095836.1 5887420..5887944(-) (comL/pilP) [Pseudomonas aeruginosa strain 2021CK-01227]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGTGGCGGTTCCGATTTCGCCGACCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTTGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362