Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LDO07_RS10200 Genome accession   NZ_AP024937
Coordinates   1868241..1869506 (+) Length   421 a.a.
NCBI ID   WP_143586772.1    Uniprot ID   -
Organism   Thermus thermophilus strain AK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1863241..1874506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO07_RS10170 (TthAK1_20070) folE 1864483..1865106 (-) 624 WP_011173891.1 GTP cyclohydrolase I FolE -
  LDO07_RS10175 (TthAK1_20080) - 1865145..1865837 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  LDO07_RS10180 (TthAK1_20090) - 1865818..1866198 (-) 381 WP_143586766.1 NUDIX hydrolase -
  LDO07_RS10185 (TthAK1_20100) - 1866189..1867052 (-) 864 WP_223965771.1 DUF1028 domain-containing protein -
  LDO07_RS10190 - 1867141..1867270 (+) 130 Protein_1990 GTP-binding protein -
  LDO07_RS10195 (TthAK1_20120) - 1867532..1868210 (-) 679 Protein_1991 hypothetical protein -
  LDO07_RS10200 (TthAK1_20130) rarA 1868241..1869506 (+) 1266 WP_143586772.1 replication-associated recombination protein A Machinery gene
  LDO07_RS10205 (TthAK1_20140) - 1869457..1870026 (-) 570 WP_143586774.1 hypothetical protein -
  LDO07_RS10210 (TthAK1_20150) - 1870053..1870838 (-) 786 WP_143586776.1 carbohydrate ABC transporter permease -
  LDO07_RS10215 (TthAK1_20160) - 1870869..1872047 (+) 1179 Protein_1995 CoA transferase -
  LDO07_RS10225 (TthAK1_20170) - 1872171..1873049 (+) 879 WP_223965772.1 ABC transporter ATP-binding protein -
  LDO07_RS10230 (TthAK1_20180) - 1873042..1873812 (+) 771 WP_223965773.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46062.86 Da        Isoelectric Point: 8.3250

>NTDB_id=76048 LDO07_RS10200 WP_143586772.1 1868241..1869506(+) (rarA) [Thermus thermophilus strain AK1]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGNHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQAARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=76048 LDO07_RS10200 WP_143586772.1 1868241..1869506(+) (rarA) [Thermus thermophilus strain AK1]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCAAGGGGCTTCTAAGGCGGATGCTGGAGGCGGGGCGGCTTTCCTCCATGGTCCTTTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAACCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAGCCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)

AAA C-terminal domain (AAA_assoc_2)

(176-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.242

100

0.382

Multiple sequence alignment