Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OTU45_RS10110 Genome accession   NZ_CP113114
Coordinates   1970450..1971271 (-) Length   273 a.a.
NCBI ID   WP_000601682.1    Uniprot ID   A0A4K3G7N8
Organism   Streptococcus pneumoniae strain NP1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1965450..1976271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS10065 (OTU45_10065) - 1965995..1966312 (-) 318 WP_000615767.1 thioredoxin family protein -
  OTU45_RS10070 (OTU45_10070) - 1966309..1966608 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  OTU45_RS10075 (OTU45_10075) - 1966806..1966868 (-) 63 WP_219300018.1 hypothetical protein -
  OTU45_RS10080 (OTU45_10080) - 1966893..1967084 (-) 192 WP_000291826.1 cell wall-binding protein -
  OTU45_RS10085 (OTU45_10085) - 1967245..1967919 (-) 675 WP_000725719.1 LiaF transmembrane domain-containing protein -
  OTU45_RS10090 (OTU45_10090) - 1967924..1968370 (-) 447 WP_000776596.1 LytTR family DNA-binding domain-containing protein -
  OTU45_RS10095 (OTU45_10095) - 1968484..1968987 (-) 504 WP_000800945.1 phosphatase PAP2 family protein -
  OTU45_RS10100 (OTU45_10100) - 1968984..1969346 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  OTU45_RS10105 (OTU45_10105) rcrQ 1969412..1970443 (-) 1032 WP_000506424.1 ABC transporter ATP-binding protein Regulator
  OTU45_RS10110 (OTU45_10110) rcrP 1970450..1971271 (-) 822 WP_000601682.1 ABC transporter permease Regulator
  OTU45_RS10115 (OTU45_10115) - 1971288..1971759 (-) 472 Protein_1989 MarR family winged helix-turn-helix transcriptional regulator -
  OTU45_RS10120 (OTU45_10120) - 1971883..1972599 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OTU45_RS10125 (OTU45_10125) ply 1973480..1974895 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  OTU45_RS10130 (OTU45_10130) - 1974906..1975316 (-) 411 WP_000595758.1 hypothetical protein -
  OTU45_RS10135 (OTU45_10135) - 1975309..1975917 (-) 609 WP_000083614.1 hypothetical protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30604.17 Da        Isoelectric Point: 5.9310

>NTDB_id=760360 OTU45_RS10110 WP_000601682.1 1970450..1971271(-) (rcrP) [Streptococcus pneumoniae strain NP1]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=760360 OTU45_RS10110 WP_000601682.1 1970450..1971271(-) (rcrP) [Streptococcus pneumoniae strain NP1]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4K3G7N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593