Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P7I96_RS28005 Genome accession   NZ_CP124660
Coordinates   5912413..5912838 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 2022CK-00160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5907413..5917838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I96_RS27990 (P7I96_27990) pilX 5907977..5908564 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  P7I96_RS27995 (P7I96_27995) pilY1 5908576..5912067 (+) 3492 WP_023086645.1 type 4a pilus biogenesis protein PilY1 -
  P7I96_RS28000 (P7I96_28000) pilY2 5912069..5912416 (+) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  P7I96_RS28005 (P7I96_28005) comF 5912413..5912838 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  P7I96_RS28010 (P7I96_28010) ispH 5912885..5913829 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P7I96_RS28015 (P7I96_28015) fkpB 5913915..5914355 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  P7I96_RS28020 (P7I96_28020) lspA 5914348..5914857 (-) 510 WP_003110420.1 signal peptidase II -
  P7I96_RS28025 (P7I96_28025) ileS 5914850..5917681 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=760299 P7I96_RS28005 WP_003094721.1 5912413..5912838(+) (comF) [Pseudomonas aeruginosa strain 2022CK-00160]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=760299 P7I96_RS28005 WP_003094721.1 5912413..5912838(+) (comF) [Pseudomonas aeruginosa strain 2022CK-00160]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383