Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OVY33_RS00630 Genome accession   NZ_CP113107
Coordinates   130758..133145 (+) Length   795 a.a.
NCBI ID   WP_309306611.1    Uniprot ID   -
Organism   Staphylococcus rostri strain PJFA-333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 125758..138145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS00605 - 126028..126219 (+) 192 WP_103358890.1 CsbD family protein -
  OVY33_RS00610 - 126351..127364 (-) 1014 WP_103358891.1 LLM class flavin-dependent oxidoreductase -
  OVY33_RS00615 - 127673..128821 (+) 1149 WP_103358892.1 cysteine desulfurase family protein -
  OVY33_RS00620 mnmA 128818..129930 (+) 1113 WP_103358893.1 tRNA 2-thiouridine(34) synthase MnmA -
  OVY33_RS00625 - 130081..130755 (+) 675 WP_103358910.1 tetratricopeptide repeat protein -
  OVY33_RS00630 recD2 130758..133145 (+) 2388 WP_309306611.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OVY33_RS00635 alaS 133394..136024 (+) 2631 WP_309306612.1 alanine--tRNA ligase -
  OVY33_RS00640 - 136090..136365 (+) 276 WP_103358896.1 IreB family regulatory phosphoprotein -
  OVY33_RS00645 ruvX 136358..136786 (+) 429 WP_103358897.1 Holliday junction resolvase RuvX -
  OVY33_RS00650 - 136800..137120 (+) 321 WP_103358898.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89211.34 Da        Isoelectric Point: 4.3934

>NTDB_id=760273 OVY33_RS00630 WP_309306611.1 130758..133145(+) (recD2) [Staphylococcus rostri strain PJFA-333]
MDNPTLLDSTYVKGDVALILFQNSDNFYTVLKVDVADTNGDFEDEATVVGYFPDIVEDETYTFKGYVVEHARYGKQLKAE
TFQKEIPQTKDAVIAYLSSALFKGIGVKTAEAIVNTLGEDAIHQILNDASCLARVPKLSKDKQEQIAQQVYQNQESEQIM
IRLNELGFGSKLAMDIYKFYQSDTLKVLDSNPYQLVYDIKGVGFQKADQLAQQLGIHPMHQDRLRAGILYVVEETCIKNG
HTYLPAEALINAAIELLSKNMTDVIDMAAMQECMTQLVEEQKLIAVDDIVAMPSLYYSELKSTQNLFKVANQKQALTKFD
LSDIQLHIGEIEEMNEVSYATSQKEALECAIQNKVMLLTGGPGTGKTTVIKGIVQLYAEMHGLSLDYDDYDEDEAFPVVL
AAPTGRASKRLHESTGLEAMTVHRLIGWNQETKPDDLLEHEIDARLIIIDEMSMVDTWLFHQFMNAVPVDAQIVLVGDED
QLPSVGPGQVFKDLIDADVLPRINLTEVYRQQDGSSIIDLAHRMKMGEEVDITQRFHDRSFIPCQTSQIPEIVDKIVTNA
VGKGYTMSDIQVLAPMYRGSAGIQKLNQVLQNILNPKEDDDHREVPFGDVVFRQGDKVLQLVNRPNDNVFNGDIGEIVGI
FWAKENALNKDVVIVDYEGNEITYMRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLV
FLGDAEAFNIGLHTHGQTRLTQLQSFLVTYFKGTAPEDETGEDADTNFIASMFQVNPMINMGDTTPYDFLEIDKA

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=760273 OVY33_RS00630 WP_309306611.1 130758..133145(+) (recD2) [Staphylococcus rostri strain PJFA-333]
GTGGACAACCCAACGTTATTAGATAGCACCTATGTCAAAGGTGACGTTGCACTTATACTTTTTCAAAACAGTGACAATTT
CTATACCGTTTTAAAAGTCGATGTAGCGGATACAAATGGCGACTTTGAAGATGAAGCAACGGTCGTTGGGTATTTTCCGG
ATATCGTTGAAGACGAAACGTATACATTCAAAGGCTACGTTGTTGAGCATGCACGCTACGGCAAGCAACTGAAAGCGGAG
ACGTTTCAAAAAGAAATCCCTCAAACGAAAGATGCGGTAATCGCCTATTTATCGAGTGCGTTGTTCAAAGGCATCGGTGT
TAAAACCGCAGAAGCTATCGTAAACACGCTAGGCGAAGATGCGATTCATCAAATATTAAACGACGCGTCATGTTTAGCAC
GCGTGCCTAAGCTGTCCAAAGATAAGCAAGAACAAATTGCGCAACAAGTATACCAAAACCAAGAAAGTGAACAGATTATG
ATTCGCTTGAACGAGTTAGGCTTCGGTTCCAAGCTTGCGATGGACATTTATAAATTTTATCAATCGGATACATTAAAAGT
GCTCGACAGTAATCCTTACCAGCTCGTGTATGACATCAAAGGGGTTGGTTTCCAAAAAGCCGATCAGCTAGCGCAACAAC
TCGGCATTCATCCGATGCACCAAGATCGCTTACGTGCAGGCATTCTATACGTTGTAGAGGAAACGTGTATTAAAAACGGG
CATACGTATTTGCCGGCAGAAGCACTCATTAATGCGGCGATTGAGCTGTTATCAAAAAATATGACAGACGTTATTGATAT
GGCGGCGATGCAAGAGTGTATGACACAATTAGTTGAAGAACAGAAATTGATTGCGGTCGATGATATTGTTGCGATGCCGA
GTCTGTATTATTCTGAACTGAAAAGTACGCAAAACTTATTTAAAGTGGCGAATCAGAAGCAAGCACTGACGAAATTTGAT
TTGTCTGATATTCAATTACATATTGGTGAAATTGAAGAAATGAATGAAGTCAGCTATGCGACCTCTCAAAAAGAAGCGTT
GGAATGCGCAATTCAGAATAAAGTGATGTTGTTAACAGGTGGTCCAGGTACTGGTAAGACGACGGTCATTAAAGGGATTG
TGCAACTTTATGCGGAAATGCATGGCTTATCGTTGGATTATGATGATTATGACGAAGATGAGGCTTTCCCAGTCGTACTT
GCGGCGCCAACGGGTCGGGCGTCTAAACGTCTGCATGAGTCAACGGGATTAGAAGCGATGACCGTGCATCGTTTGATTGG
TTGGAATCAGGAGACAAAGCCAGATGACTTGTTGGAACATGAGATTGATGCACGTTTAATTATTATTGATGAGATGTCGA
TGGTCGATACGTGGCTATTTCATCAGTTTATGAATGCTGTCCCAGTCGATGCGCAAATTGTGCTTGTAGGCGATGAAGAT
CAGTTGCCTTCAGTAGGACCGGGGCAAGTGTTCAAAGACTTAATTGACGCGGATGTGCTACCGAGAATTAACTTAACGGA
AGTGTATCGTCAACAAGACGGCTCGAGCATTATTGACTTGGCACACCGTATGAAAATGGGTGAAGAAGTCGACATTACCC
AACGATTTCATGACCGTTCATTTATTCCATGCCAAACGTCGCAAATTCCAGAAATCGTCGATAAAATTGTAACGAATGCT
GTTGGTAAAGGTTACACAATGTCAGACATTCAAGTGTTAGCACCGATGTATCGTGGCAGTGCAGGCATTCAAAAACTGAA
CCAAGTCCTGCAAAACATTTTAAATCCGAAAGAAGATGACGATCATCGCGAAGTCCCGTTTGGTGATGTGGTGTTTCGTC
AAGGGGATAAAGTGTTACAGTTGGTTAACCGACCGAACGACAATGTCTTTAATGGGGACATCGGTGAGATTGTAGGTATC
TTTTGGGCGAAAGAGAACGCCTTGAATAAAGATGTGGTCATTGTTGATTATGAAGGTAATGAGATTACATATATGCGTTC
AGACTTAACAGAACTCACACATGCGTATTGTACTTCAATTCATAAAGCACAAGGGTCAGAATTTCCTATTGTCATTATGC
CGATTGTCAAACAGTATTATCGTATGTTACAAAAGCCAATCTTGTATACAGGTCTGACACGTGCCAAACAATCGCTCGTA
TTTCTAGGCGATGCAGAAGCATTTAATATTGGTCTACATACACATGGACAGACACGTTTGACTCAACTGCAGTCGTTCCT
AGTCACATACTTTAAAGGCACAGCGCCAGAAGATGAGACAGGCGAGGATGCGGACACAAATTTTATAGCTTCGATGTTCC
AAGTCAATCCAATGATTAATATGGGCGATACGACGCCATATGACTTTCTAGAAATTGACAAAGCCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

AAA domain (AAA_30)

(339-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.623

100

0.497