Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OSV60_RS01575 Genome accession   NZ_CP113077
Coordinates   333534..334175 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 86II/2C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328534..339175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS01555 (OSV60_01555) - 328581..328913 (+) 333 WP_000169598.1 DUF7709 family protein -
  OSV60_RS01560 (OSV60_01560) - 328916..329740 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  OSV60_RS01565 (OSV60_01565) ponA 329758..332313 (-) 2556 WP_141546406.1 penicillin-binding protein PBP1a -
  OSV60_RS01570 (OSV60_01570) pilM 332476..333534 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OSV60_RS01575 (OSV60_01575) pilN 333534..334175 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OSV60_RS01580 (OSV60_01580) pilO 334172..334912 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSV60_RS01585 (OSV60_01585) pilP 334923..335450 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  OSV60_RS01590 (OSV60_01590) pilQ 335513..337678 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OSV60_RS01595 (OSV60_01595) aroK 337690..338259 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=759944 OSV60_RS01575 WP_000201227.1 333534..334175(+) (pilN) [Acinetobacter baumannii strain 86II/2C]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=759944 OSV60_RS01575 WP_000201227.1 333534..334175(+) (pilN) [Acinetobacter baumannii strain 86II/2C]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709