Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P7I92_RS24560 Genome accession   NZ_CP124654
Coordinates   5266909..5267334 (+) Length   141 a.a.
NCBI ID   WP_023107845.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01851     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5261909..5272334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I92_RS24545 (P7I92_24545) pilX 5262473..5263060 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  P7I92_RS24550 (P7I92_24550) pilY1 5263072..5266563 (+) 3492 WP_023111845.1 type 4a pilus biogenesis protein PilY1 -
  P7I92_RS24555 (P7I92_24555) pilY2 5266565..5266912 (+) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  P7I92_RS24560 (P7I92_24560) comF 5266909..5267334 (+) 426 WP_023107845.1 type 4a pilus minor pilin PilE Machinery gene
  P7I92_RS24565 (P7I92_24565) ispH 5267379..5268323 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P7I92_RS24570 (P7I92_24570) fkpB 5268409..5268849 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  P7I92_RS24575 (P7I92_24575) lspA 5268842..5269351 (-) 510 WP_003094728.1 signal peptidase II -
  P7I92_RS24580 (P7I92_24580) ileS 5269344..5272175 (-) 2832 WP_171892807.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15309.33 Da        Isoelectric Point: 10.0198

>NTDB_id=759889 P7I92_RS24560 WP_023107845.1 5266909..5267334(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01851]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVTKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=759889 P7I92_RS24560 WP_023107845.1 5266909..5267334(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01851]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGACCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376