Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   P7I79_RS30480 Genome accession   NZ_CP124651
Coordinates   6475683..6476279 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 2020CK-00217     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6470683..6481279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I79_RS30460 (P7I79_30460) aroK 6471814..6472332 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I79_RS30465 (P7I79_30465) pilQ 6472344..6474488 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  P7I79_RS30470 (P7I79_30470) comL/pilP 6474542..6475066 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I79_RS30475 (P7I79_30475) pilO 6475063..6475686 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I79_RS30480 (P7I79_30480) pilN 6475683..6476279 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I79_RS30485 (P7I79_30485) pilM 6476279..6477343 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P7I79_RS30490 (P7I79_30490) - 6477528..6479999 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=759699 P7I79_RS30480 WP_003095839.1 6475683..6476279(-) (pilN) [Pseudomonas aeruginosa strain 2020CK-00217]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=759699 P7I79_RS30480 WP_003095839.1 6475683..6476279(-) (pilN) [Pseudomonas aeruginosa strain 2020CK-00217]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369