Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LDO10_RS10120 Genome accession   NZ_AP024929
Coordinates   1863284..1864549 (+) Length   421 a.a.
NCBI ID   WP_223971149.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858284..1869549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO10_RS10095 (TthAA22_19820) folE 1859670..1860293 (-) 624 WP_011173891.1 GTP cyclohydrolase I FolE -
  LDO10_RS10100 (TthAA22_19830) - 1860332..1861024 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  LDO10_RS10105 (TthAA22_19840) - 1861005..1861385 (-) 381 WP_143586766.1 NUDIX hydrolase -
  LDO10_RS10110 (TthAA22_19850) - 1861376..1862239 (-) 864 WP_143586768.1 DUF1028 domain-containing protein -
  LDO10_RS10115 (TthAA22_19860) - 1862576..1863253 (-) 678 WP_172619217.1 hypothetical protein -
  LDO10_RS10120 (TthAA22_19870) rarA 1863284..1864549 (+) 1266 WP_223971149.1 replication-associated recombination protein A Machinery gene
  LDO10_RS10125 (TthAA22_19880) - 1864500..1865069 (-) 570 WP_143586774.1 hypothetical protein -
  LDO10_RS10130 (TthAA22_19890) - 1865096..1865881 (-) 786 WP_143586776.1 carbohydrate ABC transporter permease -
  LDO10_RS10135 (TthAA22_19900) - 1865912..1867090 (+) 1179 Protein_1975 CoA transferase -
  LDO10_RS10145 (TthAA22_19910) - 1867214..1868092 (+) 879 WP_223965772.1 ABC transporter ATP-binding protein -
  LDO10_RS10150 (TthAA22_19920) - 1868085..1868855 (+) 771 WP_223971151.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45930.69 Da        Isoelectric Point: 7.6004

>NTDB_id=75933 LDO10_RS10120 WP_223971149.1 1863284..1864549(+) (rarA) [Thermus thermophilus strain AA2-2]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALIPALRSRLRLFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLGSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQAARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=75933 LDO10_RS10120 WP_223971149.1 1863284..1864549(+) (rarA) [Thermus thermophilus strain AA2-2]
ATGGGGGAAGTGGAGCCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCAAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTTTCCTCCATGGTCCTTTTCGGCCCCCCGGGCACGGGCA
AGACCACTCTGGCGAGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTTTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGGCTCGTCCTCTTCCTGGACGAGGTCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCATTCCCGCCCTCCGCTCCCGCCTCCGCCTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTAGGGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAGCCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

AAA C-terminal domain (AAA_assoc_2)

(176-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.717

100

0.387

Multiple sequence alignment