Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P7I90_RS24635 Genome accession   NZ_CP124641
Coordinates   5290834..5291259 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 2021CK-01198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5285834..5296259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I90_RS24620 (P7I90_24620) pilX 5286404..5286991 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  P7I90_RS24625 (P7I90_24625) pilY1 5287003..5290488 (+) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -
  P7I90_RS24630 (P7I90_24630) pilY2 5290490..5290837 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  P7I90_RS24635 (P7I90_24635) comF 5290834..5291259 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  P7I90_RS24640 (P7I90_24640) ispH 5291304..5292248 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P7I90_RS24645 (P7I90_24645) fkpB 5292334..5292774 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  P7I90_RS24650 (P7I90_24650) lspA 5292767..5293276 (-) 510 WP_003094728.1 signal peptidase II -
  P7I90_RS24655 (P7I90_24655) ileS 5293269..5296100 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=759293 P7I90_RS24635 WP_003094721.1 5290834..5291259(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01198]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=759293 P7I90_RS24635 WP_003094721.1 5290834..5291259(+) (comF) [Pseudomonas aeruginosa strain 2021CK-01198]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATTCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383