Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   OS078_RS11755 Genome accession   NZ_CP113015
Coordinates   2332506..2333576 (-) Length   356 a.a.
NCBI ID   WP_000775706.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Zed     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2327506..2338576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS078_RS11715 gcvPA 2327683..2329029 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OS078_RS11720 gcvT 2329049..2330140 (-) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  OS078_RS11725 - 2330299..2330823 (-) 525 WP_001015117.1 shikimate kinase -
  OS078_RS11730 - 2330813..2330959 (-) 147 WP_001789879.1 hypothetical protein -
  OS078_RS11735 comGF 2331056..2331553 (-) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS078_RS11740 comGE 2331471..2331770 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS078_RS11745 comGD 2331757..2332203 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS078_RS11750 comGC 2332181..2332492 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS078_RS11755 comGB 2332506..2333576 (-) 1071 WP_000775706.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS078_RS11760 comGA 2333548..2334522 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  OS078_RS11765 - 2334574..2335197 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS078_RS11770 - 2335194..2335523 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS078_RS11775 - 2335523..2336509 (-) 987 WP_000161314.1 ROK family glucokinase -
  OS078_RS11780 - 2336506..2336709 (-) 204 WP_000087561.1 YqgQ family protein -
  OS078_RS11785 - 2336690..2338153 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41391.84 Da        Isoelectric Point: 10.0540

>NTDB_id=759070 OS078_RS11755 WP_000775706.1 2332506..2333576(-) (comGB) [Staphylococcus aureus strain Zed]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKKLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=759070 OS078_RS11755 WP_000775706.1 2332506..2333576(-) (comGB) [Staphylococcus aureus strain Zed]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGAAACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994