Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LDO09_RS10140 Genome accession   NZ_AP024926
Coordinates   1870831..1872096 (+) Length   421 a.a.
NCBI ID   WP_143586772.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865831..1877096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO09_RS10115 (TthAA11_19970) folE 1867217..1867840 (-) 624 WP_011173891.1 GTP cyclohydrolase I FolE -
  LDO09_RS10120 (TthAA11_19980) - 1867879..1868571 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  LDO09_RS10125 (TthAA11_19990) - 1868552..1868932 (-) 381 WP_143586766.1 NUDIX hydrolase -
  LDO09_RS10130 (TthAA11_20000) - 1868923..1869786 (-) 864 WP_143586768.1 DUF1028 domain-containing protein -
  LDO09_RS10135 (TthAA11_20010) - 1870123..1870800 (-) 678 WP_172619217.1 hypothetical protein -
  LDO09_RS10140 (TthAA11_20020) rarA 1870831..1872096 (+) 1266 WP_143586772.1 replication-associated recombination protein A Machinery gene
  LDO09_RS10145 (TthAA11_20030) - 1872047..1872616 (-) 570 WP_143586774.1 hypothetical protein -
  LDO09_RS10150 (TthAA11_20040) - 1872643..1873428 (-) 786 WP_143586776.1 carbohydrate ABC transporter permease -
  LDO09_RS10155 (TthAA11_20050) - 1873459..1874637 (+) 1179 Protein_1977 CoA transferase -
  LDO09_RS10165 (TthAA11_20060) - 1874761..1875639 (+) 879 WP_143586778.1 ABC transporter ATP-binding protein -
  LDO09_RS10170 (TthAA11_20070) - 1875632..1876402 (+) 771 WP_143586779.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46062.86 Da        Isoelectric Point: 8.3250

>NTDB_id=75876 LDO09_RS10140 WP_143586772.1 1870831..1872096(+) (rarA) [Thermus thermophilus strain AA1-1]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGNHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQAARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=75876 LDO09_RS10140 WP_143586772.1 1870831..1872096(+) (rarA) [Thermus thermophilus strain AA1-1]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCAAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAACCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAGCCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)

AAA C-terminal domain (AAA_assoc_2)

(176-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.242

100

0.382

Multiple sequence alignment