Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QJQ47_RS29735 Genome accession   NZ_CP124612
Coordinates   6298742..6299338 (-) Length   198 a.a.
NCBI ID   WP_031671448.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY3649     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6293742..6304338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ47_RS29715 (QJQ47_29720) aroK 6294873..6295391 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QJQ47_RS29720 (QJQ47_29725) pilQ 6295403..6297547 (-) 2145 WP_034039637.1 type 4a pilus secretin PilQ Machinery gene
  QJQ47_RS29725 (QJQ47_29730) comL/pilP 6297601..6298125 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QJQ47_RS29730 (QJQ47_29735) pilO 6298122..6298745 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QJQ47_RS29735 (QJQ47_29740) pilN 6298742..6299338 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  QJQ47_RS29740 (QJQ47_29745) pilM 6299338..6300402 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QJQ47_RS29745 (QJQ47_29750) - 6300587..6303058 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22183.52 Da        Isoelectric Point: 10.0895

>NTDB_id=758710 QJQ47_RS29735 WP_031671448.1 6298742..6299338(-) (pilN) [Pseudomonas aeruginosa strain NY3649]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPALNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=758710 QJQ47_RS29735 WP_031671448.1 6298742..6299338(-) (pilN) [Pseudomonas aeruginosa strain NY3649]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGGCCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369