Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QIU11_RS27165 Genome accession   NZ_CP124600
Coordinates   5708584..5709009 (+) Length   141 a.a.
NCBI ID   WP_058177113.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Li010     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5703584..5714009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIU11_RS27150 (QIU11_27150) pilX 5704148..5704735 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QIU11_RS27155 (QIU11_27155) pilY1 5704747..5708238 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  QIU11_RS27160 (QIU11_27160) pilY2 5708240..5708587 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  QIU11_RS27165 (QIU11_27165) comF 5708584..5709009 (+) 426 WP_058177113.1 type 4a pilus minor pilin PilE Machinery gene
  QIU11_RS27170 (QIU11_27170) ispH 5709056..5710000 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QIU11_RS27175 (QIU11_27175) fkpB 5710086..5710526 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QIU11_RS27180 (QIU11_27180) lspA 5710519..5711028 (-) 510 WP_003110420.1 signal peptidase II -
  QIU11_RS27185 (QIU11_27185) ileS 5711021..5713852 (-) 2832 WP_023103515.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15378.44 Da        Isoelectric Point: 10.1820

>NTDB_id=758600 QIU11_RS27165 WP_058177113.1 5708584..5709009(+) (comF) [Pseudomonas aeruginosa strain Li010]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTERQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=758600 QIU11_RS27165 WP_058177113.1 5708584..5709009(+) (comF) [Pseudomonas aeruginosa strain Li010]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGAGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383