Detailed information NTG0075828

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO09_RS00635
• Genome accession: NZ_AP024926
• Coordinates: 120570..121640 (+)
• Length: 356 a.a.
• NCBI ID: WP_143584238.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 115570..126640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO09_RS00615 (TthAA11_01200)	-	116067..116849 (+)	783	WP_223968803.1	RNA methyltransferase	-
LDO09_RS00620 (TthAA11_01210)	groES	116947..117252 (+)	306	WP_011174076.1	co-chaperone GroES	-
LDO09_RS00625 (TthAA11_01220)	groL	117265..118896 (+)	1632	WP_011174077.1	chaperonin GroEL	-
LDO09_RS00630 (TthAA11_01230)	-	118960..120492 (-)	1533	WP_143584236.1	thermostable carboxypeptidase 1	-
LDO09_RS00635 (TthAA11_01240)	pilD	120570..121640 (+)	1071	WP_143584238.1	A24 family peptidase	Machinery gene
LDO09_RS00640 (TthAA11_01250)	-	121678..122181 (+)	504	WP_223968805.1	DUF2939 domain-containing protein	-
LDO09_RS00645 (TthAA11_01260)	-	122195..123115 (+)	921	WP_143584244.1	nitroreductase family protein	-
LDO09_RS00650 (TthAA11_01270)	-	123069..123845 (-)	777	WP_014509755.1	C40 family peptidase	-
LDO09_RS00655 (TthAA11_01280)	-	123846..124604 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
LDO09_RS00660 (TthAA11_01290)	recF	124589..125620 (-)	1032	WP_223968807.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38081.42 Da
• Isoelectric Point: 7.7132

>NTDB_id=75828 LDO09_RS00635 WP_143584238.1 120570..121640(+) (pilD) [Thermus thermophilus strain AA1-1]
MWPLLALVLGLVVGSFLNVVIHRLPRGESVVYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDLLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVAFPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=75828 LDO09_RS00635 WP_143584238.1 120570..121640(+) (pilD) [Thermus thermophilus strain AA1-1]
ATGTGGCCCCTTCTCGCCCTGGTCCTCGGCCTCGTGGTGGGCTCCTTTTTGAACGTGGTCATCCACCGCCTGCCCCGGGG
GGAGTCCGTCGTCTACCCCCCATCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCTCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTTCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTCGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCCTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCTTCCCCGACCGGCTCACCCTGCCCCTTTTGCCTCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGCGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTCTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (102-209)

• Type IV leader peptidase family (Peptidase_A24) (219-319)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.386	100	0.478