Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ODZ84_RS09650 Genome accession   NZ_CP111121
Coordinates   2134158..2134811 (+) Length   217 a.a.
NCBI ID   WP_266176808.1    Uniprot ID   -
Organism   Chryseobacterium fluminis strain MMS21-Ot14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129158..2139811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODZ84_RS09620 (ODZ84_09620) aqpZ 2129645..2130379 (+) 735 WP_266177345.1 aquaporin Z -
  ODZ84_RS09625 (ODZ84_09625) - 2130439..2130987 (-) 549 WP_266176803.1 hypothetical protein -
  ODZ84_RS09630 (ODZ84_09630) - 2131014..2132000 (-) 987 WP_266176804.1 acyl transferase -
  ODZ84_RS09635 (ODZ84_09635) - 2132165..2132977 (-) 813 WP_266176805.1 UDP-2,3-diacylglucosamine diphosphatase -
  ODZ84_RS09640 (ODZ84_09640) - 2133002..2133448 (-) 447 WP_266176806.1 6-carboxytetrahydropterin synthase -
  ODZ84_RS09645 (ODZ84_09645) - 2133615..2134004 (-) 390 WP_266176807.1 thioesterase family protein -
  ODZ84_RS09650 (ODZ84_09650) comF 2134158..2134811 (+) 654 WP_266176808.1 ComF family protein Machinery gene
  ODZ84_RS09655 (ODZ84_09655) upp 2134951..2135604 (-) 654 WP_266176809.1 uracil phosphoribosyltransferase -
  ODZ84_RS09660 (ODZ84_09660) der 2135678..2136988 (-) 1311 WP_266176810.1 ribosome biogenesis GTPase Der -
  ODZ84_RS09670 (ODZ84_09670) - 2137312..2138403 (-) 1092 WP_323136934.1 recombinase family protein -
  ODZ84_RS09675 (ODZ84_09675) - 2138437..2138748 (-) 312 Protein_1918 recombinase family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25373.40 Da        Isoelectric Point: 8.3688

>NTDB_id=758020 ODZ84_RS09650 WP_266176808.1 2134158..2134811(+) (comF) [Chryseobacterium fluminis strain MMS21-Ot14]
MILDILFPNRCLGCNRIIDSQFMVCNLCLQHIHFTHDHYPGENFIKEKCKLRFPVENAFALMQFSKENLSQKIIHELKYK
RREKIGRILADWTTERLDFEDKKPDLLVSVPLHPKKLNKRGYNQLHLFTETLSRFYDIPFDHELLKRNHYAQAQALKDKQ
HRLETGNLFSMTRPISGHHILLIDDVFTTGNTLASIAWEILKSGSNTVSVLVMAVDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=758020 ODZ84_RS09650 WP_266176808.1 2134158..2134811(+) (comF) [Chryseobacterium fluminis strain MMS21-Ot14]
ATGATCCTAGATATTTTATTTCCGAACCGCTGCCTCGGGTGTAACCGAATTATCGACAGCCAATTCATGGTCTGCAATCT
CTGTCTTCAGCATATCCATTTTACACACGACCATTACCCGGGTGAAAATTTTATAAAAGAGAAATGTAAATTACGGTTTC
CCGTTGAAAATGCTTTCGCACTGATGCAGTTTTCGAAAGAAAATCTGAGTCAGAAAATCATCCATGAACTGAAATATAAA
AGGAGGGAAAAAATTGGAAGAATTCTGGCCGACTGGACTACGGAACGACTGGACTTTGAGGATAAAAAACCGGATCTGCT
GGTAAGTGTTCCGCTACACCCGAAAAAATTAAATAAGCGGGGATATAATCAATTGCATCTGTTTACTGAGACCTTATCCC
GGTTTTATGACATTCCTTTTGACCATGAGTTACTTAAAAGAAATCATTACGCGCAGGCGCAGGCTTTAAAAGATAAGCAA
CACCGTCTTGAAACAGGCAACCTGTTTTCTATGACAAGGCCTATTTCCGGACATCATATTTTGCTGATTGATGATGTTTT
TACCACAGGAAACACGCTGGCTTCCATCGCGTGGGAAATTTTGAAATCGGGCAGCAATACGGTAAGTGTTCTGGTGATGG
CGGTTGATGAATAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.535

100

0.525