Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OQE53_RS08015 Genome accession   NZ_CP111072
Coordinates   1584118..1584897 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain YFI-E109     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579118..1589897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQE53_RS07995 trmFO 1579805..1581112 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OQE53_RS08000 xerC 1581182..1582099 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  OQE53_RS08005 hslV 1582115..1582660 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  OQE53_RS08010 hslU 1582677..1584080 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  OQE53_RS08015 codY 1584118..1584897 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OQE53_RS08020 flgB 1585251..1585640 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  OQE53_RS08025 flgC 1585640..1586092 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  OQE53_RS08030 fliE 1586103..1586423 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  OQE53_RS08035 fliF 1586466..1588076 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  OQE53_RS08040 fliG 1588089..1589105 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  OQE53_RS08045 fliH 1589098..1589853 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=757578 OQE53_RS08015 WP_003154263.1 1584118..1584897(+) (codY) [Bacillus velezensis strain YFI-E109]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=757578 OQE53_RS08015 WP_003154263.1 1584118..1584897(+) (codY) [Bacillus velezensis strain YFI-E109]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471