Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OCUAc18_RS18630 Genome accession   NZ_AP024802
Coordinates   3842700..3843965 (-) Length   421 a.a.
NCBI ID   WP_001285411.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3837700..3848965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS18600 (OCUAc18_36440) pncA 3837928..3838572 (-) 645 WP_002123850.1 bifunctional nicotinamidase/pyrazinamidase -
  OCUAc18_RS18605 (OCUAc18_36450) dapA 3838902..3839795 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  OCUAc18_RS18610 (OCUAc18_36460) - 3839811..3840413 (+) 603 WP_001177091.1 hypothetical protein -
  OCUAc18_RS18615 (OCUAc18_36470) purC 3840450..3841169 (+) 720 WP_002123878.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  OCUAc18_RS18620 (OCUAc18_36480) - 3841362..3841565 (+) 204 WP_000418560.1 hypothetical protein -
  OCUAc18_RS18625 (OCUAc18_36490) - 3841850..3842689 (+) 840 WP_002123882.1 formate/nitrite transporter family protein -
  OCUAc18_RS18630 (OCUAc18_36500) rarA 3842700..3843965 (-) 1266 WP_001285411.1 replication-associated recombination protein A Machinery gene
  OCUAc18_RS18635 (OCUAc18_36510) - 3844071..3845240 (-) 1170 WP_002123872.1 PQQ-dependent sugar dehydrogenase -
  OCUAc18_RS18640 (OCUAc18_36520) - 3845353..3845811 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  OCUAc18_RS18645 (OCUAc18_36530) - 3846006..3846164 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  OCUAc18_RS18650 (OCUAc18_36540) - 3846336..3847073 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  OCUAc18_RS18655 (OCUAc18_36550) - 3847259..3847621 (+) 363 WP_000130110.1 HIT family protein -
  OCUAc18_RS18660 (OCUAc18_36560) mutY 3847762..3848796 (+) 1035 WP_005134462.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46960.62 Da        Isoelectric Point: 5.8354

>NTDB_id=75670 OCUAc18_RS18630 WP_001285411.1 3842700..3843965(-) (rarA) [Acinetobacter baumannii strain OCU Ac18]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDRFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=75670 OCUAc18_RS18630 WP_001285411.1 3842700..3843965(-) (rarA) [Acinetobacter baumannii strain OCU Ac18]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAGATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41

95.012

0.39

Multiple sequence alignment