Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OHI04_RS00865 Genome accession   NZ_CP110849
Coordinates   163581..164369 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain VHProbi V60     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 158581..169369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS00845 (OHI04_00845) - 158968..159759 (+) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -
  OHI04_RS00850 (OHI04_00850) - 160126..160365 (+) 240 WP_003129719.1 hypothetical protein -
  OHI04_RS00855 (OHI04_00855) - 160562..162145 (+) 1584 WP_054246834.1 APC family permease -
  OHI04_RS00860 (OHI04_00860) - 162214..163428 (+) 1215 WP_021723265.1 pyridoxal phosphate-dependent aminotransferase -
  OHI04_RS00865 (OHI04_00865) codY 163581..164369 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OHI04_RS00870 (OHI04_00870) gatC 165016..165321 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  OHI04_RS00875 (OHI04_00875) gatA 165321..166781 (+) 1461 WP_015425676.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  OHI04_RS00880 (OHI04_00880) - 166785..167387 (+) 603 WP_023163651.1 NUDIX hydrolase -
  OHI04_RS00885 (OHI04_00885) gatB 167427..168860 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=756596 OHI04_RS00865 WP_003129722.1 163581..164369(+) (codY) [Lactococcus lactis strain VHProbi V60]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=756596 OHI04_RS00865 WP_003129722.1 163581..164369(+) (codY) [Lactococcus lactis strain VHProbi V60]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGAATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462