Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OPU65_RS22350 Genome accession   NZ_CP110812
Coordinates   4308374..4310770 (+) Length   798 a.a.
NCBI ID   WP_265626115.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4303374..4315770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS22330 (OPU65_22330) cymR 4304777..4305193 (+) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -
  OPU65_RS22335 (OPU65_22335) - 4305214..4306353 (+) 1140 WP_265626113.1 cysteine desulfurase family protein -
  OPU65_RS22340 (OPU65_22340) mnmA 4306459..4307577 (+) 1119 WP_265626114.1 tRNA 2-thiouridine(34) synthase MnmA -
  OPU65_RS22345 (OPU65_22345) - 4307672..4308322 (+) 651 WP_243942870.1 lipopolysaccharide assembly protein LapB -
  OPU65_RS22350 (OPU65_22350) recD2 4308374..4310770 (+) 2397 WP_265626115.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OPU65_RS22355 (OPU65_22355) - 4310859..4311323 (+) 465 WP_265626116.1 PRC-barrel domain-containing protein -
  OPU65_RS22360 (OPU65_22360) - 4311339..4311530 (+) 192 WP_016885531.1 hypothetical protein -
  OPU65_RS22365 (OPU65_22365) - 4311546..4311677 (+) 132 WP_003183926.1 YrzQ family protein -
  OPU65_RS22370 (OPU65_22370) - 4311765..4312823 (+) 1059 WP_020452397.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89740.41 Da        Isoelectric Point: 5.0157

>NTDB_id=756403 OPU65_RS22350 WP_265626115.1 4308374..4310770(+) (recD2) [Bacillus paralicheniformis strain CamBx3]
MQHHNPDQIEMEEASFVKGTVAAVIYHNETNLYTVLKVKVAETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVKKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLLKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIDTRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFEFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=756403 OPU65_RS22350 WP_265626115.1 4308374..4310770(+) (recD2) [Bacillus paralicheniformis strain CamBx3]
ATGCAGCACCATAACCCGGACCAAATCGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAAGTAAAAGTGGCAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGATGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTCAAAAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAGCAGATTATGATCTCCCTGAGCGAATTCGGTTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTTGATAAAATCCGCGAAAATCCGTACCAGCTTCTCAAGGATGTCGAAGGAATCGGCTTTATCAAGGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAGGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGACATACGTACATAGACACGAGACAGCTCATCATCGAGACGCAAAAACTGTTAAATCAGTCTGC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCCGACGCGATCATTTCTTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTACTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCGATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGAGCCGCTAAGCGGATGAGTGAGTCGACCGGGCTGCCGGCCGT
GACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAGGACAATCCGATTGAAGGGCGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATACAGGTG
ATTATGGTCGGAGACGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTTTTGGCATCGAATGTCAT
TCCTTCTGTCAGATTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTCATTCGCTGCCGCCAGCAGCAGATTAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGAGG
AGCGGCCGGCATCAACGAGTTAAACGCGCTTTTGCAGGGCATACTGAATCCCCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGAGATGTCGTGTACCGTACCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAACACAACGTGTTTAACGGTGAC
ATGGGTGAGATTGTTTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGACATGGCCGTCGTCTCTTTCGACGGGAA
TGAAATCACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTGTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTCTGTGCGGGGAAGAAGAAGCCCTTGAATGGGGCGTGAAAAATAAAGAATCATCGGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAACTCATGGCGCTGCAAAAAGAGCTGC
CTTTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGAATTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)

AAA domain (AAA_30)

(346-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.602

100

0.817