Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OPU65_RS22275 Genome accession   NZ_CP110812
Coordinates   4290684..4293032 (+) Length   782 a.a.
NCBI ID   WP_265626102.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4285684..4298032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS22255 (OPU65_22255) spoVB 4285937..4287490 (-) 1554 WP_265626096.1 stage V sporulation protein B -
  OPU65_RS22260 (OPU65_22260) - 4287608..4287904 (+) 297 WP_265626098.1 post-transcriptional regulator -
  OPU65_RS22265 (OPU65_22265) secDF 4287941..4290166 (+) 2226 WP_265626100.1 protein translocase subunit SecDF -
  OPU65_RS22270 (OPU65_22270) - 4290320..4290613 (+) 294 WP_265626101.1 lipopolysaccharide assembly LapA domain-containing protein -
  OPU65_RS22275 (OPU65_22275) recJ 4290684..4293032 (+) 2349 WP_265626102.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OPU65_RS22280 (OPU65_22280) - 4293050..4293562 (+) 513 WP_154995795.1 adenine phosphoribosyltransferase -
  OPU65_RS22285 (OPU65_22285) - 4293732..4295933 (+) 2202 WP_023855390.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  OPU65_RS22290 (OPU65_22290) dtd 4295947..4296390 (+) 444 WP_265626104.1 D-aminoacyl-tRNA deacylase -
  OPU65_RS22295 (OPU65_22295) - 4296420..4297991 (-) 1572 WP_265626105.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87558.10 Da        Isoelectric Point: 4.7526

>NTDB_id=756402 OPU65_RS22275 WP_265626102.1 4290684..4293032(+) (recJ) [Bacillus paralicheniformis strain CamBx3]
MLASKMRWDVQTPDKEKVEQLAGSLGITPLAASLLVMRGYDTADKAASFLNGKDAVFHDPYLLKDMEKAVQRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRKTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVAARPGWNPGVVGIVASKLVERYYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEEDFIPVQDVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDDSRKIGANKNHLKLVLADGENKLDCIGFYKGAIEDGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLTGTGLEEELTVISGPEEAERLDLESRYAVFIDIPPSLDI
FDQVIKGEKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAENAVAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=756402 OPU65_RS22275 WP_265626102.1 4290684..4293032(+) (recJ) [Bacillus paralicheniformis strain CamBx3]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGTTTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCAGCTTCATTTTTAAATGGCAAGG
ATGCTGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACAGCGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAATGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTTGACACAGGCATTGCCGCCGTTCATGAAGCTGAAGTCGCTAAAGAGCTT
GGCGTCGATCTGATCATTACGGATCACCATGAGCCGGGCCCCGTTTTGCCGGATGCCTATGCGATCATTCATCCGAAGCA
GCCAGGCTGCGGCTATCCATTTAAAGAGCTTGCAGGCGTCGGTGTCGCATTTAAGCTTGCCCATGCCTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGATCTTGTGCCGCTCCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAAAACGAAGCGCCCCGGATTAAAAGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAATGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTCCTGAACACAGAAGACGAAACAGAAGCGGAAGAGCTTGCCGAAGACATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAATCCCGGTGTCGTCGGAATCGTGGCTTCAAAGCTTGTCGAGCGCTATTACAGGCCAGCCA
TCGTTCTCGGCATCGATGAAGAAAAAGGCATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAC
CTCTCGGAGTGCAGGGATATTCTCCCGCACTTCGGAGGCCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGATGT
TTCGGCACTGAGGGAGAGGATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCCGTCCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATCACGGTTGACAGCATTGCCGAAATGAACATGCTGGCGCCGTTCGGCACGGGAAAT
CCGAAGCCGTTCGTTCTTGTCAGCGACGTTAAAATTGATGATTCCAGGAAAATCGGCGCCAACAAGAATCACTTGAAGCT
TGTGCTGGCAGACGGCGAGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGCCATTGAAGACGGGATCGTTCCCGGGG
CAAAGATCTCGATTGTAGGGGAACTGTCGATTAACGAGTGGAACAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGGAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGACCCTGCAAA
ACGGGCGTGCATCTGCTTCCGCGAGGAAACAAAAGCGAAGCTTACGGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGCCCTGAAGAGGCAGAGCGTCTCGACCTTGAGAGCCGCTATGCGGTATTTATAGATATTCCGCCGTCGCTCGACATC
TTTGACCAGGTGATAAAAGGTGAAAAACTGGAGCGCATTTATCTGATTTTTTATCAATCAGATGAACATTTTTTCTCAAC
ATTTCCAACAAGGGAATACTTTAAATGGTACTATGCTTTCCTCTTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GGGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATCTGACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGTCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.014

99.872

0.689