Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OPU65_RS05255 Genome accession   NZ_CP110812
Coordinates   1011455..1012234 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain CamBx3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006455..1017234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS05225 (OPU65_05225) fliH 1006497..1007264 (-) 768 WP_265627069.1 flagellar assembly protein FliH -
  OPU65_RS05230 (OPU65_05230) fliG 1007248..1008264 (-) 1017 WP_043926372.1 flagellar motor switch protein FliG -
  OPU65_RS05235 (OPU65_05235) fliF 1008278..1009879 (-) 1602 WP_265627070.1 flagellar basal-body MS-ring/collar protein FliF -
  OPU65_RS05240 (OPU65_05240) fliE 1009930..1010247 (-) 318 WP_243940292.1 flagellar hook-basal body complex protein FliE -
  OPU65_RS05245 (OPU65_05245) flgC 1010261..1010713 (-) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  OPU65_RS05250 (OPU65_05250) flgB 1010713..1011102 (-) 390 WP_243940290.1 flagellar basal body rod protein FlgB -
  OPU65_RS05255 (OPU65_05255) codY 1011455..1012234 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OPU65_RS05260 (OPU65_05260) hslU 1012273..1013676 (-) 1404 WP_243940288.1 HslU--HslV peptidase ATPase subunit -
  OPU65_RS05265 (OPU65_05265) hslV 1013693..1014238 (-) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  OPU65_RS05270 (OPU65_05270) xerC 1014252..1015166 (-) 915 WP_265627071.1 tyrosine recombinase XerC -
  OPU65_RS05275 (OPU65_05275) trmFO 1015233..1016537 (-) 1305 WP_265627072.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=756346 OPU65_RS05255 WP_003181756.1 1011455..1012234(-) (codY) [Bacillus paralicheniformis strain CamBx3]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=756346 OPU65_RS05255 WP_003181756.1 1011455..1012234(-) (codY) [Bacillus paralicheniformis strain CamBx3]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTACACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCTAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTTGTAGGAATGGAAATTCTCCGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCCCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTGCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467