Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OP858_RS05850 Genome accession   NZ_CP110784
Coordinates   1189349..1191799 (+) Length   816 a.a.
NCBI ID   WP_016898207.1    Uniprot ID   -
Organism   Staphylococcus capitis strain CCSM0123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1184349..1196799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP858_RS05825 (OP858_05825) - 1184866..1185006 (+) 141 WP_002436115.1 SAS049 family protein -
  OP858_RS05830 (OP858_05830) - 1185060..1186055 (-) 996 WP_002453387.1 LLM class flavin-dependent oxidoreductase -
  OP858_RS05835 (OP858_05835) - 1186316..1187458 (+) 1143 WP_002436113.1 cysteine desulfurase family protein -
  OP858_RS05840 (OP858_05840) mnmA 1187458..1188576 (+) 1119 WP_186334441.1 tRNA 2-thiouridine(34) synthase MnmA -
  OP858_RS05845 (OP858_05845) - 1188679..1189347 (+) 669 WP_186334442.1 tetratricopeptide repeat protein -
  OP858_RS05850 (OP858_05850) recD2 1189349..1191799 (+) 2451 WP_016898207.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OP858_RS05855 (OP858_05855) alaS 1192139..1194769 (+) 2631 WP_002453382.1 alanine--tRNA ligase -
  OP858_RS05860 (OP858_05860) - 1194833..1195093 (+) 261 WP_002453381.1 IreB family regulatory phosphoprotein -
  OP858_RS05865 (OP858_05865) ruvX 1195095..1195523 (+) 429 WP_002435990.1 Holliday junction resolvase RuvX -
  OP858_RS05870 (OP858_05870) - 1195537..1195857 (+) 321 WP_002436074.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 91855.26 Da        Isoelectric Point: 4.6342

>NTDB_id=756096 OP858_RS05850 WP_016898207.1 1189349..1191799(+) (recD2) [Staphylococcus capitis strain CCSM0123]
MSDPTLFDKSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQIVEHPRYGKQLKAE
TFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNALGENAINDILNNPEVLEKVPSLPKKKQKQIAEQISSNQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIVADSEERLKAGLLYTLEEECIKQG
HTYLPNSYVIESTQTMLNDSSEVVISTKMLEQKIEQLSEEKKLIQSEEQVSIPSLYYSELKSVQNLYRIQTNNKKLKEIE
QSDLQMHIGEIESLNQVNYATSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIDSKRIPRVNLTEVYRQQDGSSIVDLAHRMKVGEPIDITQRFHDRSFINCTSDQIPDVVDKVVKSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKEKDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVIVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFDIGLKTKGQERLTQLNHLLKSYFGDDQEVIGSSGHSSVNSTEKHDTTQTEEESATTDAPQNDIVLSETTIFKID
PMINMGEMTPYDFAEH

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=756096 OP858_RS05850 WP_016898207.1 1189349..1191799(+) (recD2) [Staphylococcus capitis strain CCSM0123]
ATGTCTGACCCTACACTTTTTGATAAATCAATGATCAAAGGTACTGTAGATGCTATATTATTTCAAAATAATGATAATTT
CTATACAGTTCTTAAAGTAGACACGATTGAAACGAATGAGTCCTTTGATAGCATGCCAACTGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTTTATACGTTTAAAGGGCAAATTGTCGAACACCCACGTTATGGTAAACAATTAAAAGCTGAA
ACTTTTGAAAAGGAACTTCCACAAACCAAAGATGCAATTATTAGTTATTTATCTAGTGATTTATTTAAAGGAATAGGAAA
GAAAACTGCTCAAAATATTGTTAATGCATTAGGCGAGAATGCAATCAATGATATATTAAATAATCCTGAAGTGTTAGAAA
AAGTCCCTAGTTTACCTAAGAAAAAGCAAAAGCAGATTGCAGAACAAATAAGTTCGAATCAAGAATCAGAAAAAATAATG
ATTCGGTTACATGATTTAGGATTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATATGGGAGATACATTGAAAAT
ACTAGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATAGGTTTTAATAAAGCTGATCAATTAGCGCGAAACA
TTGGTATTGTAGCAGATTCTGAAGAGCGTTTGAAAGCAGGATTGCTTTATACACTTGAAGAAGAATGTATCAAACAAGGA
CATACATATTTGCCTAATTCATATGTGATTGAATCAACGCAAACTATGCTTAACGATAGCTCTGAAGTTGTTATTTCTAC
TAAAATGCTAGAGCAAAAGATTGAGCAACTCTCTGAAGAGAAAAAATTGATTCAAAGCGAAGAACAAGTTTCAATTCCAA
GTTTGTATTATTCGGAATTAAAGAGTGTTCAAAATCTTTATCGGATTCAAACTAATAATAAAAAGTTAAAAGAAATCGAA
CAATCAGATTTACAAATGCATATTGGTGAAATTGAGTCACTAAATCAAGTAAATTATGCAACTTCACAGAAAGAAGCATT
AGAGACGGCAATCAATTCAAAAGTGATGCTTCTTACAGGTGGTCCCGGTACTGGTAAAACTACTGTCATTAAAGGCATCG
TAGAGCTTTATGCGGAAATACATGGATTATCATTGGATTATGATGATTACAACGAGGATGATTATCCAGTTGTACTTGCT
GCACCAACTGGACGCGCATCTAAAAGACTTCAGGAATCTACTGGATTAGAAGCAATGACAATTCACCGTTTAATAGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAATGCACGGCTTATCATTATAGATGAAATGTCTATGG
TAGATACATGGTTATTTCATCAATTTTTAAGTGCTGTTCCATTAGATGCTCAAATTGTATTTGTAGGAGATGAAGACCAA
CTCCCTTCAGTTGGACCGGGTCAAGTGTTTAAAGACCTCATTGATTCTAAAAGAATTCCGCGTGTTAATCTTACGGAAGT
GTATCGCCAACAAGATGGCTCAAGTATTGTTGATTTAGCACATCGTATGAAAGTAGGCGAACCCATAGATATAACTCAAC
GTTTTCACGATCGCAGTTTCATTAACTGTACTTCAGACCAAATACCTGATGTAGTAGATAAAGTAGTTAAAAGTGCAGTG
AGTAAAGGGTATAATATGAGTGATATTCAAGTCCTTGCTCCTATGTATAAAGGTAATGCAGGAATAAAACGTCTCAATCA
AGTATTACAATCTATTTTAAATCCAAAGGAAAAAGATAGTCGTGAAATTGAATTCGGAGATGTTGTATTTCGTAAAGGAG
ATAAAGTACTTCAGTTGGTCAATAGACCTAATGACAATATATTTAATGGTGATATTGGTGTAATTGTAGGCATATTTTGG
GCTAAAGAAAATGCTCTTAATAAAGATGTAATAGTAGTAGATTTTGAAGGAAATGAAATTACCTTTACTCGACAAGATTT
ACTTGAACTTACTCATGCTTATTGTACATCTATTCATAAATCTCAAGGGTCAGAATTTCCAATTGTTATTATGCCTATAG
TTAAACAATACTTTCGTATGTTACAAAGACCTATCCTTTATACGGGTCTGACCCGTGCTAAGCAATCACTTGTTTTACTT
GGGGATCCCCAAGCATTTGATATAGGACTGAAGACAAAAGGCCAAGAACGTTTAACTCAGTTGAATCACTTATTAAAATC
TTATTTTGGTGATGATCAAGAAGTTATAGGTAGTTCAGGTCATTCATCTGTAAATAGCACTGAAAAACATGATACTACAC
AAACTGAAGAAGAGAGCGCAACAACTGACGCACCACAAAATGACATTGTTCTTAGTGAAACCACTATATTTAAAATTGAT
CCTATGATTAATATGGGAGAAATGACGCCTTACGATTTTGCCGAGCATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.14

99.755

0.49