Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OKX00_RS08460 Genome accession   NZ_CP110666
Coordinates   1655498..1657798 (+) Length   766 a.a.
NCBI ID   WP_265410101.1    Uniprot ID   -
Organism   Fictibacillus sp. KU28468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1650498..1662798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKX00_RS08435 (OKX00_08435) - 1651255..1651872 (+) 618 WP_265410099.1 YczE/YyaS/YitT family protein -
  OKX00_RS08440 (OKX00_08440) cymR 1651895..1652314 (+) 420 WP_053357733.1 cysteine metabolism transcriptional regulator CymR -
  OKX00_RS08445 (OKX00_08445) - 1652341..1653480 (+) 1140 WP_062236971.1 cysteine desulfurase family protein -
  OKX00_RS08450 (OKX00_08450) mnmA 1653577..1654701 (+) 1125 WP_053357734.1 tRNA 2-thiouridine(34) synthase MnmA -
  OKX00_RS08455 (OKX00_08455) - 1654793..1655440 (+) 648 WP_416054310.1 tetratricopeptide repeat protein -
  OKX00_RS08460 (OKX00_08460) recD2 1655498..1657798 (+) 2301 WP_265410101.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OKX00_RS08465 (OKX00_08465) - 1657878..1658318 (+) 441 WP_265410102.1 PRC-barrel domain-containing protein -
  OKX00_RS08470 (OKX00_08470) - 1658343..1658540 (+) 198 WP_053357738.1 hypothetical protein -
  OKX00_RS08475 (OKX00_08475) - 1658576..1658740 (+) 165 WP_265410103.1 hypothetical protein -
  OKX00_RS08480 (OKX00_08480) - 1658846..1659910 (+) 1065 WP_265410104.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 766 a.a.        Molecular weight: 86468.41 Da        Isoelectric Point: 5.0429

>NTDB_id=755866 OKX00_RS08460 WP_265410101.1 1655498..1657798(+) (recD2) [Fictibacillus sp. KU28468]
MDKQSSFDLFDEQAKYLKGTLLTTIFFNQENLYTVARIRVHETNESYDEKEAVITGTLPPLYQDERYIFFGHFKEHPKYG
NQYHVTQFRKDMPQTKEGMVQYLSGDLFHGIGKKTAEAIVNHLGENAISAILENPDVLNGIPQLNEEKAKNLYDVLIEHQ
GLEQVMVTLNPFGIGPQLSMKIYQTYKEEALHIIQNNPYQLIYDIEGIGFQRADELGKGIGLSYNHPERIRAGCLYILQD
RGTDAGHVYLPSELVMEEVKKLLTNGEAPINDSDIFREIEALREDQKIVMEDDRLYLPSLYFSEKGLAESVTGIASQEEY
KEAFPHSEFLKALGELEERLGIEYAPSQKQAIETAVYSPVMVLTGGPGTGKTTVIKGIVEVYAELHGVSLDPSSYKKDEP
FPVLLVAPTGRAAKRMSESTGIPAFTIHRLLGWKGGAGFEHSDENPLEGKLLIIDEMSMVDIWLAHALFKAVPGNIQIII
VGDEDQLPSVGPGQVLRDLIASKVIPTVELKDIYRQAEGSSIIELAHNMKNGVLPNDLRKRKADRSFFSCQPQQVLEVVK
QVCQNARQKGYTPRDIQVLAPMYKGNAGIDILNQTLQELFNPSGPQKRELNIQQVAFRVGDKVLQLVNQPEDNVYNGDMG
EIVSIIYAKETTDKEDQLVVAFDDVEVVYTRSDFHHITHAYCCSIHKSQGSEFPIVIMPVVKSYFRMLRRNLIYTGITRS
REFLILCGEESAFELAVQRNDESARYSRLKERLTQFNMENVSSMNP

Nucleotide


Download         Length: 2301 bp        

>NTDB_id=755866 OKX00_RS08460 WP_265410101.1 1655498..1657798(+) (recD2) [Fictibacillus sp. KU28468]
ATGGATAAACAGTCTTCTTTCGATTTATTCGATGAACAAGCAAAATATTTAAAAGGCACGCTGCTTACTACCATTTTCTT
TAATCAGGAAAACTTGTACACTGTCGCACGCATCCGCGTGCATGAGACGAATGAATCGTACGATGAGAAGGAGGCAGTAA
TCACAGGTACTCTTCCACCGCTGTATCAGGATGAACGCTATATTTTCTTTGGCCATTTCAAAGAACATCCGAAATACGGA
AATCAATATCATGTGACACAGTTCCGCAAAGATATGCCGCAGACCAAAGAAGGAATGGTTCAATATCTTTCTGGTGACCT
CTTCCATGGAATCGGCAAAAAAACAGCCGAAGCAATCGTCAATCATCTGGGGGAAAACGCCATTTCTGCGATATTGGAAA
ACCCGGATGTGTTGAATGGCATCCCGCAGCTGAATGAAGAAAAAGCAAAGAATTTGTATGACGTTCTTATTGAGCACCAA
GGGCTTGAGCAGGTCATGGTGACGCTGAATCCATTTGGTATCGGTCCCCAGCTCTCAATGAAAATTTATCAAACGTATAA
GGAAGAAGCTCTTCATATCATTCAAAATAATCCGTACCAGCTCATCTATGACATTGAAGGAATTGGTTTTCAGCGTGCCG
ACGAGCTCGGTAAAGGGATTGGGCTTTCTTACAACCATCCGGAACGGATCAGAGCAGGCTGTTTATATATCCTTCAGGAT
AGGGGAACGGACGCCGGCCACGTTTATCTTCCTTCTGAACTTGTGATGGAAGAAGTGAAAAAACTGCTAACCAATGGAGA
AGCTCCGATCAACGATTCAGATATTTTCCGTGAGATTGAGGCCCTGAGAGAGGATCAAAAAATCGTCATGGAGGATGACA
GGCTCTATCTGCCCTCACTGTATTTTTCAGAAAAAGGGCTTGCAGAATCGGTAACAGGCATTGCCAGCCAGGAGGAGTAT
AAGGAAGCTTTTCCTCATTCCGAATTCCTAAAAGCACTGGGTGAACTGGAAGAAAGACTGGGAATCGAGTATGCGCCATC
ACAAAAGCAAGCTATCGAGACGGCTGTTTATTCACCGGTCATGGTGCTTACAGGCGGTCCAGGTACGGGTAAGACTACCG
TTATTAAAGGGATTGTCGAAGTATATGCAGAACTGCACGGTGTTTCATTGGACCCTTCATCCTATAAGAAGGATGAACCG
TTCCCTGTGCTGCTTGTTGCTCCAACCGGCAGGGCCGCAAAACGGATGTCAGAATCCACGGGTATTCCAGCATTTACGAT
CCATCGTCTGTTAGGGTGGAAAGGCGGAGCGGGCTTTGAACATAGTGATGAGAACCCGCTGGAAGGAAAACTCCTTATAA
TAGATGAGATGTCAATGGTTGACATTTGGCTTGCACATGCCCTGTTTAAAGCAGTTCCAGGCAATATTCAAATCATTATT
GTCGGGGACGAAGATCAGCTGCCTTCTGTTGGTCCTGGCCAAGTGCTGCGGGATCTGATTGCATCGAAAGTGATTCCCAC
GGTTGAACTTAAAGACATTTACAGGCAGGCAGAAGGCTCTTCCATCATTGAATTGGCTCACAACATGAAGAACGGCGTAC
TTCCGAATGATCTGAGAAAAAGAAAAGCGGACCGAAGCTTCTTTTCTTGCCAGCCGCAGCAAGTTCTGGAAGTGGTGAAA
CAGGTGTGCCAAAACGCGAGGCAAAAAGGGTATACGCCCAGGGATATTCAAGTCCTGGCTCCCATGTACAAGGGCAATGC
AGGTATCGATATTCTGAATCAGACGCTGCAGGAACTCTTTAATCCTTCAGGGCCGCAAAAGCGCGAGTTGAATATTCAGC
AGGTGGCTTTCAGGGTTGGAGATAAGGTTCTGCAGCTCGTTAATCAACCGGAAGACAACGTGTACAACGGCGATATGGGA
GAGATCGTATCCATTATTTATGCAAAAGAAACGACGGATAAGGAAGATCAGCTCGTGGTTGCGTTTGATGATGTGGAAGT
CGTGTATACACGATCAGATTTTCATCATATAACACATGCTTACTGCTGTTCGATCCATAAGTCTCAGGGAAGTGAATTTC
CGATCGTGATCATGCCAGTGGTGAAAAGTTATTTCCGTATGCTGCGAAGAAACTTGATCTATACCGGAATTACAAGAAGC
CGAGAATTTTTAATTCTGTGCGGAGAAGAATCAGCCTTTGAACTTGCTGTTCAGCGTAATGATGAATCTGCCAGGTATTC
GAGACTGAAGGAGCGGCTGACTCAGTTTAACATGGAAAACGTTTCAAGCATGAACCCTTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(344-546)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-662)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.59

97.389

0.59