Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OKX00_RS08380 Genome accession   NZ_CP110666
Coordinates   1638124..1640454 (+) Length   776 a.a.
NCBI ID   WP_265410095.1    Uniprot ID   -
Organism   Fictibacillus sp. KU28468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633124..1645454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKX00_RS08360 (OKX00_08360) - 1633402..1633629 (+) 228 WP_265410092.1 hypothetical protein -
  OKX00_RS08365 (OKX00_08365) spoVB 1633707..1635260 (-) 1554 WP_265410093.1 stage V sporulation protein B -
  OKX00_RS08370 (OKX00_08370) - 1635380..1635643 (+) 264 WP_265410094.1 post-transcriptional regulator -
  OKX00_RS08375 (OKX00_08375) secDF 1635848..1638062 (+) 2215 Protein_1656 protein translocase subunit SecDF -
  OKX00_RS08380 (OKX00_08380) recJ 1638124..1640454 (+) 2331 WP_265410095.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OKX00_RS08385 (OKX00_08385) - 1640485..1640997 (+) 513 WP_256226183.1 adenine phosphoribosyltransferase -
  OKX00_RS08390 (OKX00_08390) - 1641157..1643337 (+) 2181 WP_265410096.1 RelA/SpoT family protein -
  OKX00_RS08395 (OKX00_08395) dtd 1643361..1643804 (+) 444 WP_053357726.1 D-aminoacyl-tRNA deacylase -
  OKX00_RS08400 (OKX00_08400) - 1643859..1644038 (+) 180 WP_309144587.1 RNA polymerase subunit sigma-70 -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 87111.47 Da        Isoelectric Point: 5.1274

>NTDB_id=755865 OKX00_RS08380 WP_265410095.1 1638124..1640454(+) (recJ) [Fictibacillus sp. KU28468]
MLKARTRWNVRTLDEDKVKELASSLKIPKLVANLLVARGMETKTSAEQFLSSGTEAFYDPFLMDGMREAVDRIQQAVASQ
EKILIFGDYDADGVSSTSVMVYTLKALDANFDFYIPNRFTEGYGPNEPALRWAKEQGFSLVITVDTGISAVNEARAAKEM
GLDFIITDHHEPPPVLPNAYSIINPKKPGCPYPFKGLAGVGVAFKVAHALLGKAPLHLLDIASIGTIADLVPLVDENRII
AKEGIKALERTTKTGLRALLEVAGLKDTVLNAEHVGFAIGPRVNAVGRLDSAVPAVELFTTDDKEEAAMLAAEIDQLNKT
RQTIVSEITKEAIELVEQKYPPDKNNVLVVAKEGWNAGVIGIVASRLVEQFYRPTIVLSIDEEKGLAKGSARSIEGFDMF
ENLSLSRDILPHFGGHPMAAGMTLAVSDLDELRSRLNRQAGEQLTEEDFKPVTSIDLECSLDEVSIETIEQMNKLAPFGV
SNPTPRVLIPDVRISEIKKIGTQSNHLKIQFSDGKSKLDAIGFHKGPLMDELSYHSPLSAVGELSINEWNGFRKPQLMLS
DLAVKEWQLFDLRGIRDAQKKLSGLPKDKVLLIAFEADTKEHPAFSDLKEQIRLYPQEKESLNFEEKYVVFLDVPKTREE
FFYLLESNPEPERTYVIFHQENDQFFSTVPTREQFRWFYAFLTKRKTFDASKHGEELARLKGWSREAVPFMSKVFFELDF
VTIEDGVISINDRPDKKDLKHSYTYRSKLEQAEIENQLVYSSYQDLKNCFDQYKGK

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=755865 OKX00_RS08380 WP_265410095.1 1638124..1640454(+) (recJ) [Fictibacillus sp. KU28468]
ATGTTGAAAGCACGAACGAGGTGGAATGTCCGAACTTTAGATGAAGATAAAGTAAAGGAATTAGCCTCTTCTTTAAAAAT
CCCAAAGTTAGTAGCCAACCTATTAGTTGCAAGGGGAATGGAAACAAAAACTAGTGCTGAACAGTTTTTGTCCAGTGGAA
CGGAGGCTTTTTATGATCCCTTCTTAATGGATGGGATGAGAGAAGCTGTTGATCGGATCCAACAGGCTGTTGCCAGCCAA
GAAAAGATTCTTATTTTTGGTGATTATGATGCAGATGGAGTAAGCAGTACATCTGTTATGGTATATACATTAAAGGCGTT
AGACGCCAATTTTGATTTTTACATACCAAATCGTTTTACAGAAGGCTATGGACCAAATGAACCCGCGTTAAGATGGGCGA
AGGAACAAGGTTTCAGTCTTGTTATTACAGTCGATACGGGGATTTCAGCTGTGAATGAAGCACGTGCGGCGAAAGAGATG
GGACTGGATTTTATCATCACTGACCATCATGAGCCTCCGCCTGTTCTGCCTAATGCTTATAGTATTATCAATCCCAAAAA
ACCCGGATGCCCATATCCTTTTAAAGGGCTGGCGGGAGTAGGTGTCGCGTTCAAAGTTGCGCATGCTCTCCTTGGCAAAG
CTCCGCTTCACTTATTGGATATTGCCTCCATTGGCACGATTGCTGATCTGGTTCCTCTTGTGGATGAAAACCGCATCATT
GCAAAAGAAGGAATAAAGGCACTGGAGAGAACCACTAAGACAGGATTAAGAGCACTTCTCGAGGTTGCTGGTTTAAAAGA
TACGGTGCTGAATGCAGAGCATGTAGGGTTTGCGATTGGCCCCCGTGTTAATGCGGTTGGAAGACTGGATTCTGCAGTTC
CTGCGGTTGAGCTTTTTACGACTGATGACAAGGAAGAAGCTGCCATGCTTGCCGCTGAAATTGATCAATTGAACAAAACA
CGTCAAACCATTGTATCTGAGATCACAAAGGAAGCCATTGAATTGGTGGAACAAAAGTATCCACCTGATAAAAACAATGT
TCTTGTTGTCGCAAAGGAAGGATGGAACGCAGGAGTCATCGGTATCGTAGCTTCCCGGCTAGTCGAACAATTTTACCGTC
CGACAATCGTTTTAAGCATCGATGAAGAGAAGGGCCTTGCCAAAGGATCGGCAAGGAGCATTGAAGGCTTTGATATGTTT
GAGAACTTATCGTTGAGCCGTGATATACTTCCACACTTTGGAGGGCATCCTATGGCGGCAGGCATGACTTTGGCCGTAAG
TGATCTGGATGAACTGAGAAGCCGGCTTAACCGCCAGGCTGGTGAACAATTAACAGAAGAAGATTTTAAACCCGTGACTT
CTATTGATTTGGAATGCTCACTTGATGAAGTATCCATTGAAACCATTGAACAAATGAACAAATTGGCTCCTTTTGGTGTC
AGTAACCCTACTCCGCGCGTACTGATACCTGATGTTAGAATCAGCGAGATCAAGAAGATCGGCACTCAGTCCAACCATTT
GAAAATACAATTCTCAGATGGCAAATCCAAGCTGGATGCGATTGGTTTTCATAAAGGCCCGCTAATGGATGAGCTAAGCT
ATCATTCCCCGCTCTCAGCGGTAGGAGAGCTATCAATCAATGAATGGAACGGGTTCCGGAAACCGCAGCTTATGCTTAGT
GATCTGGCCGTAAAAGAATGGCAATTATTTGATCTGAGAGGGATAAGGGACGCTCAGAAAAAACTGTCCGGCCTCCCTAA
GGACAAGGTTCTTCTCATCGCCTTTGAGGCAGATACGAAGGAACATCCTGCGTTTTCAGACTTGAAAGAGCAGATCCGGC
TTTATCCGCAGGAAAAAGAAAGCCTGAATTTTGAAGAAAAGTATGTTGTTTTTCTCGATGTTCCAAAAACAAGGGAAGAA
TTCTTTTATCTGCTGGAAAGCAATCCAGAACCCGAAAGAACATATGTCATCTTCCACCAGGAAAATGATCAGTTCTTTTC
CACTGTTCCGACAAGAGAGCAGTTCAGATGGTTTTATGCGTTCTTAACCAAACGTAAAACATTTGATGCCAGCAAGCACG
GAGAGGAACTGGCTAGACTTAAGGGCTGGTCGCGTGAAGCAGTGCCATTTATGTCAAAAGTGTTTTTTGAGCTGGATTTT
GTTACAATAGAAGATGGTGTTATTTCGATTAATGATCGTCCTGACAAAAAAGACCTGAAGCATTCATATACATATAGGAG
TAAATTAGAACAAGCGGAGATTGAAAATCAACTTGTCTATTCTTCCTATCAGGATTTGAAGAACTGCTTTGATCAGTATA
AAGGGAAATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(82-208)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.264

99.742

0.541