Detailed information NTG0755509

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP92_RS22890
• Genome accession: NZ_CP124372
• Coordinates: 4582553..4583545 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0151
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4577553..4588545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP92_RS22860 (QJP92_22860)	ispD	4577614..4578324 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP92_RS22865 (QJP92_22865)	ispF	4578324..4578803 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP92_RS22870 (QJP92_22870)	truD	4578800..4579849 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP92_RS22875 (QJP92_22875)	surE	4579830..4580591 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP92_RS22880 (QJP92_22880)	pcm	4580585..4581211 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP92_RS22885 (QJP92_22885)	nlpD	4581396..4582490 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP92_RS22890 (QJP92_22890)	rpoS	4582553..4583545 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP92_RS22895 (QJP92_22895)	-	4583716..4584267 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP92_RS22900 (QJP92_22900)	-	4584492..4585535 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP92_RS22905 (QJP92_22905)	ygbN	4585678..4587042 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP92_RS22910 (QJP92_22910)	ygbM	4587131..4587907 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=755509 QJP92_RS22890 WP_000081550.1 4582553..4583545(+) (rpoS) [Escherichia coli strain AVS0151]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=755509 QJP92_RS22890 WP_000081550.1 4582553..4583545(+) (rpoS) [Escherichia coli strain AVS0151]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715