Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OCX20_RS06225 Genome accession   NZ_AP024738
Coordinates   1273117..1273890 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 59731     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268117..1278890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX20_RS06205 trmFO 1268461..1269768 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OCX20_RS06210 xerC 1270185..1271081 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  OCX20_RS06215 hslV 1271078..1271623 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OCX20_RS06220 hslU 1271689..1273092 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OCX20_RS06225 codY 1273117..1273890 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OCX20_RS06230 - 1273941..1274033 (+) 93 WP_031788481.1 hypothetical protein -
  OCX20_RS06235 rpsB 1274232..1274999 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  OCX20_RS06240 - 1275033..1275146 (+) 114 WP_001789890.1 hypothetical protein -
  OCX20_RS06245 tsf 1275181..1276062 (+) 882 WP_000201387.1 translation elongation factor Ts -
  OCX20_RS06250 pyrH 1276199..1276921 (+) 723 WP_000057330.1 UMP kinase -
  OCX20_RS06255 frr 1276940..1277494 (+) 555 WP_001280006.1 ribosome recycling factor -
  OCX20_RS06260 - 1277867..1278637 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=75451 OCX20_RS06225 WP_000055337.1 1273117..1273890(+) (codY) [Staphylococcus aureus strain 59731]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=75451 OCX20_RS06225 WP_000055337.1 1273117..1273890(+) (codY) [Staphylococcus aureus strain 59731]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment