Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | OM984_RS03040 | Genome accession | NZ_CP110279 |
| Coordinates | 596231..597010 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain 7702 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 561909..635832 | 596231..597010 | within | 0 |
Gene organization within MGE regions
Location: 561909..635832
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM984_RS02890 (OM984_02890) | - | 562253..563923 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| OM984_RS02895 (OM984_02895) | dapA | 564689..565567 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| OM984_RS02900 (OM984_02900) | dapG | 565579..566811 (-) | 1233 | WP_000692470.1 | aspartate kinase | - |
| OM984_RS02905 (OM984_02905) | asd | 566835..567881 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| OM984_RS02910 (OM984_02910) | dpaB | 568032..568631 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| OM984_RS02915 (OM984_02915) | dpaA | 568628..569530 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| OM984_RS02920 (OM984_02920) | - | 569805..570056 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| OM984_RS02925 (OM984_02925) | - | 570183..571424 (-) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| OM984_RS02930 (OM984_02930) | - | 571511..572410 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| OM984_RS02935 (OM984_02935) | pnp | 572562..574700 (-) | 2139 | WP_000076733.1 | polyribonucleotide nucleotidyltransferase | - |
| OM984_RS02940 (OM984_02940) | rpsO | 574861..575130 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| OM984_RS02945 (OM984_02945) | ribF | 575231..576202 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| OM984_RS02950 (OM984_02950) | truB | 576246..577169 (-) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| OM984_RS02955 (OM984_02955) | rbfA | 577256..577612 (-) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| OM984_RS02960 (OM984_02960) | - | 577628..577909 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| OM984_RS02965 (OM984_02965) | infB | 577906..579966 (-) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| OM984_RS02970 (OM984_02970) | - | 579971..580282 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| OM984_RS02975 (OM984_02975) | rnpM | 580283..580555 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| OM984_RS02980 (OM984_02980) | nusA | 580567..581673 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| OM984_RS02985 (OM984_02985) | rimP | 581691..582161 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| OM984_RS02990 (OM984_02990) | - | 582494..586795 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| OM984_RS02995 (OM984_02995) | - | 586920..588620 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| OM984_RS03000 (OM984_03000) | rseP | 588730..589986 (-) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| OM984_RS03005 (OM984_03005) | dxr | 590003..591145 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| OM984_RS03010 (OM984_03010) | cdsA | 591169..591960 (-) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| OM984_RS03015 (OM984_03015) | uppS | 591978..592754 (-) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| OM984_RS03020 (OM984_03020) | frr | 592840..593397 (-) | 558 | WP_000531498.1 | ribosome recycling factor | - |
| OM984_RS03025 (OM984_03025) | pyrH | 593400..594122 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| OM984_RS03030 (OM984_03030) | tsf | 594189..595076 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| OM984_RS03035 (OM984_03035) | rpsB | 595180..595881 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| OM984_RS03040 (OM984_03040) | codY | 596231..597010 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| OM984_RS03045 (OM984_03045) | hslU | 597088..598479 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| OM984_RS03050 (OM984_03050) | hslV | 598502..599044 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| OM984_RS03055 (OM984_03055) | xerC | 599087..599986 (-) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| OM984_RS03060 (OM984_03060) | trmFO | 600052..601356 (-) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| OM984_RS03065 (OM984_03065) | topA | 601407..603485 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| OM984_RS03070 (OM984_03070) | dprA | 603630..604378 (-) | 749 | Protein_615 | DNA-processing protein DprA | - |
| OM984_RS03075 (OM984_03075) | sucD | 604586..605488 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| OM984_RS03080 (OM984_03080) | sucC | 605509..606669 (-) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| OM984_RS03085 (OM984_03085) | rnhB | 606863..607636 (-) | 774 | WP_001174712.1 | ribonuclease HII | - |
| OM984_RS03090 (OM984_03090) | ylqF | 607688..608578 (-) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| OM984_RS03095 (OM984_03095) | lepB | 608599..609150 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| OM984_RS03100 (OM984_03100) | rplS | 609252..609596 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| OM984_RS03105 (OM984_03105) | trmD | 609743..610477 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| OM984_RS03110 (OM984_03110) | rimM | 610477..610992 (-) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| OM984_RS03115 (OM984_03115) | - | 611113..611340 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| OM984_RS03120 (OM984_03120) | rpsP | 611355..611627 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| OM984_RS03125 (OM984_03125) | ffh | 611728..613077 (-) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| OM984_RS03130 (OM984_03130) | - | 613090..613422 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| OM984_RS03135 (OM984_03135) | ftsY | 613555..614544 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| OM984_RS03140 (OM984_03140) | smc | 614560..618129 (-) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| OM984_RS03145 (OM984_03145) | rncS | 618276..619013 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| OM984_RS03150 (OM984_03150) | acpP | 619072..619305 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| OM984_RS03155 (OM984_03155) | fabG | 619375..620115 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| OM984_RS03160 (OM984_03160) | fabD | 620115..621059 (-) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| OM984_RS03165 (OM984_03165) | plsX | 621074..622066 (-) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| OM984_RS03170 (OM984_03170) | fapR | 622063..622656 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| OM984_RS03175 (OM984_03175) | recG | 622745..624793 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| OM984_RS03180 (OM984_03180) | - | 625083..626759 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| OM984_RS03185 (OM984_03185) | - | 626782..627144 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| OM984_RS03190 (OM984_03190) | rpmB | 627523..627711 (+) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| OM984_RS03195 (OM984_03195) | spoVM | 627784..627864 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| OM984_RS03200 (OM984_03200) | - | 627931..628611 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| OM984_RS03205 (OM984_03205) | rpe | 628711..629355 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| OM984_RS03210 (OM984_03210) | rsgA | 629358..630239 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| OM984_RS03215 (OM984_03215) | prkC | 630508..632481 (-) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| OM984_RS03220 (OM984_03220) | - | 632490..633242 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| OM984_RS03225 (OM984_03225) | rlmN | 633247..634335 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| OM984_RS03230 (OM984_03230) | rsmB | 634340..635674 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=753706 OM984_RS03040 WP_000421288.1 596231..597010(-) (codY) [Bacillus anthracis strain 7702]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=753706 OM984_RS03040 WP_000421288.1 596231..597010(-) (codY) [Bacillus anthracis strain 7702]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |