Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OM992_RS13880 Genome accession   NZ_CP110268
Coordinates   2699647..2702007 (-) Length   786 a.a.
NCBI ID   WP_264818897.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2694647..2707007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS13860 (OM992_13860) - 2694722..2696284 (+) 1563 WP_264818894.1 SH3 domain-containing protein -
  OM992_RS13865 (OM992_13865) dtd 2696311..2696754 (-) 444 WP_264818895.1 D-aminoacyl-tRNA deacylase -
  OM992_RS13870 (OM992_13870) relA 2696767..2698971 (-) 2205 WP_264818896.1 GTP diphosphokinase -
  OM992_RS13875 (OM992_13875) - 2699129..2699641 (-) 513 WP_003152714.1 adenine phosphoribosyltransferase -
  OM992_RS13880 (OM992_13880) recJ 2699647..2702007 (-) 2361 WP_264818897.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OM992_RS13885 (OM992_13885) - 2702063..2702389 (-) 327 WP_016938811.1 lipopolysaccharide assembly LapA domain-containing protein -
  OM992_RS13890 (OM992_13890) - 2702453..2702950 (-) 498 WP_049627103.1 cation:proton antiporter regulatory subunit -
  OM992_RS13895 (OM992_13895) secDF 2703081..2705300 (-) 2220 WP_264818898.1 protein translocase subunit SecDF -
  OM992_RS13900 (OM992_13900) - 2705337..2705633 (-) 297 WP_045926489.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87538.00 Da        Isoelectric Point: 4.8969

>NTDB_id=753679 OM992_RS13880 WP_264818897.1 2699647..2702007(-) (recJ) [Bacillus siamensis strain YB-1631]
MLASKMRWEIQQPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARHFLHTKDADFYDPYELKGMREAVDRIKLAVSQG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIEKLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTEDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQDGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVPDLRDRLNQLAEETLTEEDFIPIQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDAAVLDCVGFNKGELEAGIVPGSAISIVGEMSINEWNNKKKPQLMIKDA
AVLEWQLFDIRGKRTWEDTVAALPKEKRVLISFNEKTARKLRGEELPDELVQITSESEAEALPLDGKYAVFLDVPPSEER
LKRLLDGKKPERIYFVFINHEEHFLSSFPSRSDFKWFYAFLLKRGNFDLSKHGSELARHKGWSIDTINFMTKVFFDLGFV
KIEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=753679 OM992_RS13880 WP_264818897.1 2699647..2702007(-) (recJ) [Bacillus siamensis strain YB-1631]
ATGTTAGCATCAAAAATGCGCTGGGAAATCCAGCAGCCGGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGCGCAAGGCATTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAAGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCTCAAGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACATCAGTGATGCTGACGGCACTCAGACAGCT
GTCAGCAAACGTTGATTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGTTTTTCGCTTATCATTACAGTGGATACGGGCATCGCCGCCGTTCATGAAGCTGAAGTCGCAAAAGAGCTG
GGCCTAGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGACGTATTTGCGATCATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTAGCGGCAATCGGTACGGTTGCGGATCTGGTGCCGTTGCACGATGAAAACAGATTAATT
GCGTCACTTGGGATCGAAAAGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGGGATAT
CGGACAAGCTGATGAGGAAACGATCGGGTTTCAGGTTGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCTGATC
CCGCCGTGCACCTGCTGATGACCGAAGACCAGTTTGAAGCGGAGGAATTGGCTTCGGATATTGACCGGCTGAATAAGGAA
CGCCAGAAAATGGTGAAAACCATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGACGGAAACCCGTCTGCCATTGT
AGTGGCAAAAGCCGGCTGGAACCCGGGGGTTGTCGGGATTGTCGCATCGAAGCTCGCTGAACGTTTTTATCGCCCCGCTG
TCGTGCTGGGGATAGATGAGGAGCAGGGAATCGCCAAAGGATCGGCGCGAAGCATCAGGGGTTTCAACCTTTTTACGAGC
CTTTCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGGCATCCGATGGCCGCAGGAATGACTTTAAAGGCTGAAGATGT
GCCGGATTTAAGAGACAGGCTGAATCAATTGGCTGAAGAAACCCTTACGGAAGAGGATTTTATCCCGATTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATAACCGTTGAAAGCATTACAGAATTGAATATGCTCTCGCCGTTCGGCATGCTTAAC
CCTAAACCGCATGTCATGGTGGAAAACGCCGTGCTTGATGAAGTGCGCCTGATCGGAGCGAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATGCCGCCGTTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTGGAAGCCGGAATTGTCCCCGGAT
CAGCGATTTCCATTGTCGGCGAAATGTCCATTAATGAATGGAACAACAAAAAGAAACCCCAGCTGATGATTAAAGACGCT
GCGGTGCTGGAATGGCAGCTTTTTGATATCAGAGGCAAGCGGACGTGGGAAGATACGGTTGCTGCGCTGCCGAAGGAAAA
ACGGGTGCTCATCAGTTTTAACGAAAAAACTGCCCGAAAACTTCGTGGCGAAGAGCTGCCGGACGAGCTGGTTCAGATCA
CGTCGGAATCCGAGGCGGAGGCTCTTCCGCTTGACGGAAAGTATGCCGTCTTTCTGGATGTGCCGCCGTCAGAGGAGCGG
CTCAAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATCAATCATGAAGAACATTTTCTGTCCTC
ATTTCCATCGCGGAGTGATTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCAATTTTGACTTAAGTAAGCATGGTT
CGGAGCTTGCGAGACACAAAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTTGCAGATTCGCAAACCTACCAGGTAAA
ACAGCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCGGCTCATGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ACCAAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.934

100

0.819