Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OM992_RS08650 Genome accession   NZ_CP110268
Coordinates   1633789..1634568 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628789..1639568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS08630 (OM992_08630) trmFO 1629476..1630783 (+) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OM992_RS08635 (OM992_08635) xerC 1630853..1631770 (+) 918 WP_047475018.1 tyrosine recombinase XerC -
  OM992_RS08640 (OM992_08640) hslV 1631786..1632331 (+) 546 WP_016936128.1 ATP-dependent protease subunit HslV -
  OM992_RS08645 (OM992_08645) hslU 1632348..1633751 (+) 1404 WP_060962796.1 HslU--HslV peptidase ATPase subunit -
  OM992_RS08650 (OM992_08650) codY 1633789..1634568 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OM992_RS08655 (OM992_08655) flgB 1634922..1635311 (+) 390 WP_264820130.1 flagellar basal body rod protein FlgB -
  OM992_RS08660 (OM992_08660) flgC 1635311..1635763 (+) 453 WP_016936125.1 flagellar basal body rod protein FlgC -
  OM992_RS08665 (OM992_08665) fliE 1635774..1636094 (+) 321 WP_016936124.1 flagellar hook-basal body complex protein FliE -
  OM992_RS08670 (OM992_08670) fliF 1636137..1637747 (+) 1611 WP_049628466.1 flagellar basal-body MS-ring/collar protein FliF -
  OM992_RS08675 (OM992_08675) fliG 1637760..1638776 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  OM992_RS08680 (OM992_08680) fliH 1638769..1639521 (+) 753 WP_045926457.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=753660 OM992_RS08650 WP_013352252.1 1633789..1634568(+) (codY) [Bacillus siamensis strain YB-1631]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=753660 OM992_RS08650 WP_013352252.1 1633789..1634568(+) (codY) [Bacillus siamensis strain YB-1631]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCAGAAACGCTTCGCGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAACCTTTTC
AACGTTCCGGAGACATCTTCAAACCTTGATATCAACAGCGAATATACGGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACGACGATTGTGCCGATTATCGGCGGAGGAGAGCGCCTGGGGACATTGATTCTGTCCCGTCTGCAGGACC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCAGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTTTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTAGGCATTACCC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTCGAAAGCGCCGGCGTTATTGAATCCAGATCACTTGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAATAAATTCCTTATTGAATTGGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467