Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QE150_RS10780 Genome accession   NZ_CP123993
Coordinates   2102736..2103371 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain Ab4294     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097736..2108371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS10755 (QE150_10755) - 2097791..2098771 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  QE150_RS10760 (QE150_10760) kdsB 2098783..2099544 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QE150_RS10765 (QE150_10765) lpxK 2099555..2100565 (-) 1011 WP_075400335.1 tetraacyldisaccharide 4'-kinase -
  QE150_RS10770 (QE150_10770) msbA 2100568..2102295 (-) 1728 WP_004835304.1 lipid A export permease/ATP-binding protein MsbA -
  QE150_RS10775 (QE150_10775) - 2102292..2102720 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  QE150_RS10780 (QE150_10780) exbB 2102736..2103371 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QE150_RS10785 (QE150_10785) - 2103421..2104308 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  QE150_RS10790 (QE150_10790) - 2104305..2105087 (-) 783 WP_000057212.1 ParA family protein -
  QE150_RS10795 (QE150_10795) rsmG 2105109..2105741 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QE150_RS10800 (QE150_10800) murU 2105829..2106518 (-) 690 WP_000646457.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  QE150_RS10805 (QE150_10805) - 2106518..2107531 (-) 1014 WP_001096104.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=753660 QE150_RS10780 WP_000264037.1 2102736..2103371(-) (exbB) [Acinetobacter baumannii strain Ab4294]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=753660 QE150_RS10780 WP_000264037.1 2102736..2103371(-) (exbB) [Acinetobacter baumannii strain Ab4294]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCGCAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTTTATTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393