Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   OM992_RS01780 Genome accession   NZ_CP110268
Coordinates   353094..353492 (-) Length   132 a.a.
NCBI ID   WP_264819602.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 348094..358492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS01750 (OM992_01750) - 349270..349408 (-) 139 Protein_304 hypothetical protein -
  OM992_RS01755 (OM992_01755) - 349556..350758 (+) 1203 WP_264819598.1 GTP-binding protein -
  OM992_RS01760 (OM992_01760) - 350822..351958 (+) 1137 WP_264820250.1 zinc-dependent alcohol dehydrogenase -
  OM992_RS01765 (OM992_01765) - 351975..352409 (+) 435 WP_264819599.1 RDD family protein -
  OM992_RS01770 (OM992_01770) - 352527..352805 (+) 279 WP_406795067.1 YckD family protein -
  OM992_RS01775 (OM992_01775) - 352858..353000 (+) 143 Protein_309 family 1 glycosylhydrolase -
  OM992_RS01780 (OM992_01780) nin/comJ 353094..353492 (-) 399 WP_264819602.1 competence protein ComJ Regulator
  OM992_RS01785 (OM992_01785) nucA/comI 353514..353951 (-) 438 WP_047476187.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OM992_RS01790 (OM992_01790) hxlB 354308..354865 (-) 558 WP_016936797.1 6-phospho-3-hexuloisomerase -
  OM992_RS01795 (OM992_01795) hxlA 354862..355497 (-) 636 WP_016936796.1 3-hexulose-6-phosphate synthase -
  OM992_RS01800 (OM992_01800) - 355730..356092 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14982.09 Da        Isoelectric Point: 4.6564

>NTDB_id=753634 OM992_RS01780 WP_264819602.1 353094..353492(-) (nin/comJ) [Bacillus siamensis strain YB-1631]
MIKSWKPQELIISYHQFTIFQKDSEPPVIDWTDEAIEKGFAEADGAVSFEARRNTKAFIVLRLNTNEPVLPYEKKAAVSF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAELSDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=753634 OM992_RS01780 WP_264819602.1 353094..353492(-) (nin/comJ) [Bacillus siamensis strain YB-1631]
TTGATTAAATCATGGAAACCGCAAGAACTTATCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCCGAACCGCC
TGTTATCGATTGGACGGATGAAGCCATTGAAAAAGGATTTGCGGAGGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAAGGCATTTATTGTCCTGAGGCTTAATACAAATGAACCGGTGCTACCCTATGAGAAAAAAGCGGCTGTTTCCTTT
GAAGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAACGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACTTGTTATTCAGTGCCTGCCGAATTATCCGATCTGCATGCAGATACGTATATTATCGATGCGGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75