Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OMJ04_RS17680 Genome accession   NZ_CP110263
Coordinates   3689647..3692052 (-) Length   801 a.a.
NCBI ID   WP_252278027.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain HMB20428     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3684647..3697052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMJ04_RS17655 (OMJ04_17655) - 3686121..3687197 (-) 1077 WP_095389837.1 AI-2E family transporter -
  OMJ04_RS17660 (OMJ04_17660) - 3687424..3687639 (-) 216 WP_034311361.1 hypothetical protein -
  OMJ04_RS17665 (OMJ04_17665) - 3687629..3688087 (-) 459 WP_264895170.1 PRC-barrel domain-containing protein -
  OMJ04_RS17670 (OMJ04_17670) - 3688226..3688996 (-) 771 WP_264895171.1 YgcG family protein -
  OMJ04_RS17675 (OMJ04_17675) - 3688996..3689565 (-) 570 WP_406627510.1 LemA family protein -
  OMJ04_RS17680 (OMJ04_17680) recD2 3689647..3692052 (-) 2406 WP_252278027.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OMJ04_RS17685 (OMJ04_17685) - 3692089..3692754 (-) 666 WP_127778432.1 lipopolysaccharide assembly protein LapB -
  OMJ04_RS17690 (OMJ04_17690) mnmA 3692876..3693991 (-) 1116 WP_264895173.1 tRNA 2-thiouridine(34) synthase MnmA -
  OMJ04_RS17695 (OMJ04_17695) - 3694021..3695166 (-) 1146 WP_264895174.1 cysteine desulfurase family protein -
  OMJ04_RS17700 (OMJ04_17700) cymR 3695227..3695646 (-) 420 WP_034308657.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90557.32 Da        Isoelectric Point: 4.7955

>NTDB_id=753497 OMJ04_RS17680 WP_252278027.1 3689647..3692052(-) (recD2) [Peribacillus frigoritolerans strain HMB20428]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTSKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=753497 OMJ04_RS17680 WP_252278027.1 3689647..3692052(-) (recD2) [Peribacillus frigoritolerans strain HMB20428]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTGAGAATTCGTGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCCGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTTCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGAAAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTTCTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAGGGCCTCTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAAGTGATGATCGCCCTGAATCAATATGGCTTCGGTCCACAGCTGTCGATGAAAATTTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTAGAGGATATTGAAGGGATTGGATTTGGACGGGCGG
ATGAGCTTGGCCATCAGCTGGGCATTTCCGGCAGCCACCCCGACCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCC
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAAGCGGTCAAACGGCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGCGCCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCGATGTTAATCTTGACGGGTGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTCCCCGC
AGTTACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TAGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACCAATCAAATCCCCCAA
GTAATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGTCCAAAGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGAATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTCGTGAACCAGCCAGAGGAAGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATTTCGTTCGA
AGGCATCGAAGTGACTTACACGAAGCAGGATTTAAACCAGATTACACATGCCTATTGTTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCCATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATCTTGAGTGAAGAAGAAATGCCGGTCGAAAAAGGAGAGGTAC
ATCAAGAGGCAAGTTATCTTGATATTCTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.422

100

0.624