Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OKW95_RS18505 Genome accession   NZ_CP110254
Coordinates   3920138..3921271 (+) Length   377 a.a.
NCBI ID   WP_013199175.1    Uniprot ID   A0AAN0PBW8
Organism   Acinetobacter oleivorans strain S4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3915138..3926271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS18480 (OKW95_18485) - 3915393..3915599 (-) 207 WP_013199171.1 hypothetical protein -
  OKW95_RS18485 (OKW95_18490) - 3915654..3917768 (-) 2115 WP_013199172.1 TonB-dependent copper receptor -
  OKW95_RS18490 (OKW95_18495) - 3917841..3918266 (-) 426 WP_013199173.1 DUF2946 family protein -
  OKW95_RS18495 (OKW95_18500) def 3918310..3918840 (-) 531 WP_004795267.1 peptide deformylase -
  OKW95_RS18500 (OKW95_18505) tsaP 3918963..3920117 (+) 1155 WP_013199174.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OKW95_RS18505 (OKW95_18510) dprA 3920138..3921271 (+) 1134 WP_013199175.1 DNA-processing protein DprA Machinery gene
  OKW95_RS18510 (OKW95_18515) - 3921321..3921890 (+) 570 WP_013199176.1 L-threonylcarbamoyladenylate synthase -
  OKW95_RS18515 (OKW95_18520) - 3922282..3923202 (-) 921 WP_081399223.1 DMT family transporter -
  OKW95_RS18520 (OKW95_18525) - 3923314..3923967 (-) 654 WP_081399224.1 TetR/AcrR family transcriptional regulator -
  OKW95_RS18525 (OKW95_18530) - 3924103..3925317 (+) 1215 WP_005309158.1 MFS transporter -
  OKW95_RS18530 (OKW95_18535) - 3925339..3926103 (+) 765 WP_013199179.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41881.50 Da        Isoelectric Point: 6.4976

>NTDB_id=753403 OKW95_RS18505 WP_013199175.1 3920138..3921271(+) (dprA) [Acinetobacter oleivorans strain S4]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVNYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLIEQI
QQYTDFILTSEDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEQILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEVVVSCAPEI
PEHLINLYQSLDWVGQDIDQLVIHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=753403 OKW95_RS18505 WP_013199175.1 3920138..3921271(+) (dprA) [Acinetobacter oleivorans strain S4]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCCTTAGTTAGCTTCAA
AAAAATTGTCAATTATTTTGGTAGCTGTGAAAAAGCGGTCCAACCTGCTGGGTTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCACTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAATTGAGCAGATC
CAGCAATATACTGACTTTATTTTAACGTCCGAAGACTCTGGCTATCCTACTCAATTACTACCTTATACAGACCATCCACC
CATCATTTTTGGAAAAGGACAAGCTCAGGCTTTGTTACAGCCACAAATTGCGATTGTCGGTAGTCGAAAACCAAGCCCGC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGATTTTATGTAAGTAGTGGTTTGGCATATGGG
ATTGACGAAGCTGCTCACCAAGGAGCTTCAGCACATCAACGTACGATTGCTGTGACAGGGACCGGTTTAGACAGTACCTA
CCCTGCTCAGAATAAAAAACTTGCAGAACAGATCTTGGCTCAAAACGGCGCCATCATTACTGAGTTCTTACCTGGTACGC
CACCATTACAGCAACATTTTCCTCGTAGAAACCGAATTGTCAGTGGTCTGAGTTTAGGTGTGTTAGTGGTGGAAGCTACT
TTAAAAAGTGGTTCTCTCATTACTGCAAACAAAGCTGCCGAGCAAGGTAAAACCGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAGGGCTGCCATCAACTTATTCGTGAAGGAGCCATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ATCTTGCTTTACCTACTCAATGGCAAAGTCAGCAACAGAACTCAACTGAAGAGGTCGTGGTTTCTTGTGCCCCAGAAATT
CCTGAGCATTTGATTAACCTTTATCAGTCTTTAGACTGGGTCGGACAAGATATTGACCAGCTTGTCATACACCACTCTCA
ACCTGTGGCAGAACTCACCTCTTCACTCATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGGCTGTATTTAC
GTTGTCGCTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

89.92

100

0.899

  dprA Acinetobacter baumannii strain A118

89.39

100

0.894

  dprA Acinetobacter baylyi ADP1

70.866

100

0.716