Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OKW95_RS01730 Genome accession   NZ_CP110254
Coordinates   370602..371051 (+) Length   149 a.a.
NCBI ID   WP_013196717.1    Uniprot ID   A0AAN0P5I4
Organism   Acinetobacter oleivorans strain S4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365602..376051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS01715 (OKW95_01715) - 365651..366397 (+) 747 WP_013196714.1 PilX N-terminal domain-containing pilus assembly protein -
  OKW95_RS01720 (OKW95_01720) - 366422..370108 (+) 3687 WP_013196715.1 PilC/PilY family type IV pilus protein -
  OKW95_RS01725 (OKW95_01725) - 370118..370618 (+) 501 WP_013196716.1 type IV pilin protein -
  OKW95_RS01730 (OKW95_01730) comF 370602..371051 (+) 450 WP_013196717.1 type IV pilin protein Machinery gene
  OKW95_RS01735 (OKW95_01735) rpsP 371198..371449 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OKW95_RS01740 (OKW95_01740) rimM 371470..372018 (+) 549 WP_004789777.1 ribosome maturation factor RimM -
  OKW95_RS01745 (OKW95_01745) trmD 372061..372816 (+) 756 WP_013196718.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OKW95_RS01750 (OKW95_01750) rplS 373036..373404 (+) 369 WP_004789772.1 50S ribosomal protein L19 -
  OKW95_RS01755 (OKW95_01755) - 373458..374399 (-) 942 WP_081399246.1 lipase family alpha/beta hydrolase -
  OKW95_RS01760 (OKW95_01760) - 374516..375547 (-) 1032 WP_013196720.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16507.71 Da        Isoelectric Point: 8.4407

>NTDB_id=753372 OKW95_RS01730 WP_013196717.1 370602..371051(+) (comF) [Acinetobacter oleivorans strain S4]
MLKNGSHQGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRTDLQAEMLRINQRLQSYKVVNHSFNNATLDNGTASQNY
PLAGTAFYTVTLAIDADNQGYLLKATPIITSIQNGNGEVCVNQDQQRYWSKGLACSLISLSNTSNWDGR

Nucleotide


Download         Length: 450 bp        

>NTDB_id=753372 OKW95_RS01730 WP_013196717.1 370602..371051(+) (comF) [Acinetobacter oleivorans strain S4]
ATGCTGAAAAATGGTAGTCACCAAGGATTTACATTAATTGAGCTGATGATTGTGGTGGCGATCATTGCAATTCTGGCAGC
AATTGCTTACCCGTCTTATACTCAATATAAAATCCGTACTAATCGTACGGATTTACAAGCTGAGATGCTGCGTATTAATC
AACGATTACAAAGCTATAAAGTTGTTAATCATAGTTTTAATAATGCTACTTTAGATAATGGTACAGCCTCTCAAAATTAT
CCTTTAGCAGGAACTGCTTTTTATACTGTAACTTTAGCGATTGATGCTGATAACCAGGGATATTTGCTCAAAGCCACTCC
AATTATTACTTCTATACAAAATGGTAATGGTGAAGTTTGCGTAAATCAGGATCAACAGCGCTACTGGTCTAAAGGTCTAG
CCTGCTCATTAATAAGCTTGTCAAATACATCAAATTGGGATGGACGTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-113)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

61.538

95.973

0.591
  pilE Acinetobacter baumannii D1279779

47.482

93.289

0.443