Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OLD84_RS11360 Genome accession   NZ_CP110224
Coordinates   2165277..2167592 (-) Length   771 a.a.
NCBI ID   WP_209461979.1    Uniprot ID   -
Organism   Virgibacillus natechei strain DSM 25609     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2160277..2172592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLD84_RS11345 (OLD84_11345) alaS 2160877..2163519 (-) 2643 WP_209461977.1 alanine--tRNA ligase -
  OLD84_RS11350 (OLD84_11350) - 2163897..2164967 (-) 1071 WP_209461978.1 AI-2E family transporter -
  OLD84_RS11355 (OLD84_11355) - 2165023..2165208 (-) 186 WP_245301471.1 hypothetical protein -
  OLD84_RS11360 (OLD84_11360) recD2 2165277..2167592 (-) 2316 WP_209461979.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OLD84_RS11365 (OLD84_11365) - 2167614..2168282 (-) 669 WP_209461980.1 tetratricopeptide repeat protein -
  OLD84_RS11370 (OLD84_11370) mnmA 2168303..2169415 (-) 1113 WP_209461981.1 tRNA 2-thiouridine(34) synthase MnmA -
  OLD84_RS11375 (OLD84_11375) - 2169434..2170573 (-) 1140 WP_209461982.1 cysteine desulfurase family protein -
  OLD84_RS11380 (OLD84_11380) cymR 2170605..2171024 (-) 420 WP_209461983.1 cysteine metabolism transcriptional regulator CymR -
  OLD84_RS11385 (OLD84_11385) - 2171183..2172466 (+) 1284 WP_209461984.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87273.17 Da        Isoelectric Point: 4.8260

>NTDB_id=753168 OLD84_RS11360 WP_209461979.1 2165277..2167592(-) (recD2) [Virgibacillus natechei strain DSM 25609]
MGLDMQSNEENGYIKGKLLYTIFHNEKEHFSISKIKVEDTNENYKEKEITAKGYFSNLQEQTTYYFYGVFEKHPKFGLQY
KVNSYQTFIPDTKDGLIAYLSSDLFYGVGNKTATRIIDHLGESAISKILNNTDVLTEVPGVKRETADLLVKSLQENQGFE
HIVISLSHYGIGLKMAQKIYQEYKEAAIDILEKDPYQYVFDIDGFGFQTADEIAKQRGISLTHPNRIGAGCIYVLQKSIQ
EGHVFLPLKQCMKQMLDLLSNTSLSDEIMMDRLNELNGSKKIIIHNGNVYLPSLYYAEDGFASHIDRIMTKPIENETNLA
ELMKIIGDIEDEEVLSYGKDQFEAINQSLHSKVMIVTGGPGTGKTTVIKGILNAFATIHDMTLNPDDYDNETDFPFVLTA
PTGRAAKRLNESTGLPAVTIHRLLGWDGKDGFEKNHNNQLAGKFLIIDEFSMVDIWLANSLFKAIPDDMQVLIVGDEDQL
PSVGPGQVLSDLLSSEMIPFVSLNEVYRQKEGSKIIHLAHEIKNDSDIQLENDKDFSFIPCSEYQLIDVITKIFAKAKDK
GIDVKDIQVLAPMYRSQAGITSINKELQQLINPKTSRTREVKANDDVVYRVGDKVLQLVNQPENGVYNGDIGEVAAIFEE
DENKENVEQLVLLFEGKEVVYERKDYVNIMHAYCVSIHKSQGSEFPIVILPVVSGYNRMLRKNLLYTGITRSKESLIICG
EENAFLRGVRTMDTNKRYTTLKTQLTERLESITFISNEDSNEKEITPYDFM

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=753168 OLD84_RS11360 WP_209461979.1 2165277..2167592(-) (recD2) [Virgibacillus natechei strain DSM 25609]
ATGGGATTAGACATGCAATCGAATGAAGAAAATGGATATATAAAAGGTAAACTTCTTTATACGATTTTTCATAATGAAAA
AGAGCATTTTTCGATTTCAAAAATTAAAGTCGAGGATACAAATGAGAATTATAAAGAAAAAGAGATTACTGCTAAGGGCT
ATTTTTCTAATTTACAAGAACAAACAACCTATTATTTCTATGGCGTTTTCGAGAAACATCCTAAATTTGGTTTACAATAT
AAAGTCAATTCCTACCAAACCTTTATTCCTGACACGAAAGACGGTTTAATCGCCTACCTTTCCAGTGATTTATTTTATGG
TGTTGGTAATAAAACAGCCACTCGAATTATCGATCATTTGGGTGAGAGTGCCATATCCAAAATTCTAAATAATACAGATG
TATTAACAGAAGTTCCGGGAGTAAAAAGGGAAACGGCTGACTTATTGGTTAAAAGTCTCCAGGAAAACCAGGGATTTGAA
CACATTGTAATCTCTCTATCTCACTATGGTATTGGCTTAAAAATGGCGCAAAAAATATATCAAGAATATAAAGAAGCCGC
GATTGACATTTTGGAGAAAGATCCTTATCAGTACGTATTTGACATAGATGGATTTGGTTTCCAAACAGCAGACGAAATAG
CGAAACAGAGAGGGATCTCGCTCACACACCCAAATCGAATTGGTGCTGGATGTATTTATGTGCTACAAAAGAGTATACAG
GAAGGTCATGTTTTTTTACCACTAAAGCAATGTATGAAACAAATGCTAGATTTGCTTTCCAATACCTCTTTATCTGATGA
AATAATGATGGATAGGTTAAATGAATTAAATGGAAGCAAAAAAATTATCATTCACAATGGAAATGTTTATCTCCCATCCC
TGTATTACGCAGAAGATGGATTTGCTTCCCATATAGACAGAATTATGACAAAACCGATAGAGAACGAGACGAATTTAGCA
GAATTAATGAAGATAATTGGCGATATCGAAGACGAAGAAGTATTAAGCTATGGAAAAGATCAATTTGAAGCTATTAATCA
ATCCCTGCATTCTAAAGTTATGATTGTTACAGGTGGTCCAGGAACAGGTAAAACTACGGTCATTAAAGGAATTCTTAATG
CATTTGCCACGATTCATGATATGACGCTCAATCCAGATGATTATGACAATGAAACTGATTTTCCTTTTGTGTTAACAGCA
CCTACAGGGAGAGCTGCAAAACGTTTAAATGAATCTACCGGACTCCCTGCCGTAACAATCCATCGTCTATTAGGCTGGGA
TGGGAAAGATGGATTTGAAAAAAATCACAATAACCAATTGGCAGGCAAATTTTTAATTATAGATGAGTTTTCTATGGTGG
ATATTTGGCTTGCAAATAGTTTGTTTAAAGCAATTCCTGACGATATGCAAGTGCTTATTGTTGGTGATGAAGACCAACTC
CCATCCGTGGGGCCAGGTCAAGTGTTGTCGGATTTATTAAGCAGTGAAATGATCCCATTTGTTAGTCTTAATGAAGTATA
TCGGCAAAAAGAAGGTTCTAAAATAATTCATCTTGCTCATGAAATTAAAAATGATTCAGATATCCAGTTGGAAAATGATA
AAGACTTCAGCTTTATACCATGCAGCGAATATCAACTGATAGACGTCATTACAAAAATTTTTGCTAAAGCTAAAGACAAG
GGAATTGATGTAAAAGATATCCAAGTGCTTGCACCAATGTACCGTTCCCAGGCTGGAATCACCTCGATAAATAAAGAATT
GCAGCAACTAATTAATCCAAAGACTTCAAGAACGAGAGAAGTAAAAGCTAATGATGATGTGGTGTACAGGGTTGGAGATA
AAGTTCTGCAACTTGTTAATCAACCAGAAAATGGGGTCTATAATGGAGATATAGGTGAAGTAGCAGCTATATTTGAAGAG
GATGAAAATAAAGAAAATGTAGAACAATTAGTGCTTTTATTTGAAGGTAAGGAAGTCGTTTATGAGCGTAAAGATTACGT
GAATATTATGCATGCATATTGCGTATCGATCCATAAATCACAGGGTAGTGAATTTCCAATTGTTATCCTGCCAGTTGTTT
CTGGATACAATCGAATGCTTCGCAAAAATTTGTTGTATACAGGAATTACGAGAAGCAAAGAGTCCTTAATTATTTGTGGG
GAAGAAAATGCATTCTTGCGTGGTGTACGCACAATGGATACGAATAAACGATATACAACATTGAAGACACAATTGACAGA
AAGACTGGAGTCCATTACCTTCATCTCTAATGAAGATTCTAATGAAAAAGAAATCACACCATACGATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(337-539)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(583-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.158

100

0.492