Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OFY13_RS18430 Genome accession   NZ_CP110188
Coordinates   187792..188652 (-) Length   286 a.a.
NCBI ID   WP_088124522.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182792..193652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS00885 (OFY13_00885) gspL 183041..184252 (+) 1212 WP_001288747.1 type II secretion system protein GspL -
  OFY13_RS00890 (OFY13_00890) - 184262..184759 (+) 498 WP_000661339.1 type II secretion system protein M -
  OFY13_RS00895 (OFY13_00895) - 184761..185519 (+) 759 WP_088124520.1 type II secretion system protein N -
  OFY13_RS00900 (OFY13_00900) cysQ 185571..186398 (-) 828 WP_088124519.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OFY13_RS00905 (OFY13_00905) nudE 186421..186969 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  OFY13_RS00910 (OFY13_00910) nfuA 187117..187704 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  OFY13_RS18430 comF 187792..188652 (-) 861 WP_088124522.1 ComF family protein Machinery gene
  OFY13_RS00925 (OFY13_00925) bioH 188588..189349 (+) 762 WP_176398116.1 pimeloyl-ACP methyl ester esterase BioH -
  OFY13_RS00930 (OFY13_00930) - 189512..189982 (+) 471 WP_000961393.1 hypothetical protein -
  OFY13_RS00935 (OFY13_00935) - 190077..192398 (-) 2322 WP_000030085.1 Tex family protein -
  OFY13_RS00940 (OFY13_00940) greB 192643..193125 (+) 483 WP_000850499.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32493.43 Da        Isoelectric Point: 8.0275

>NTDB_id=752962 OFY13_RS18430 WP_088124522.1 187792..188652(-) (comF) [Vibrio cholerae strain E1]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIRSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQCQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=752962 OFY13_RS18430 WP_088124522.1 187792..188652(-) (comF) [Vibrio cholerae strain E1]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCGCTCAGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGACAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTACATCAACTCAAATACCAATGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGTATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.601

100

0.986
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388