Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NUG19_RS04005 Genome accession   NZ_CP123853
Coordinates   800282..801055 (-) Length   257 a.a.
NCBI ID   WP_042727647.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 795282..806055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG19_RS03970 - 795535..796305 (-) 771 WP_000473705.1 isoprenyl transferase -
  NUG19_RS03975 frr 796678..797232 (-) 555 WP_001280006.1 ribosome recycling factor -
  NUG19_RS03980 pyrH 797251..797973 (-) 723 WP_000057330.1 UMP kinase -
  NUG19_RS03985 tsf 798110..798991 (-) 882 WP_000201387.1 translation elongation factor Ts -
  NUG19_RS03990 - 799026..799139 (-) 114 WP_001789890.1 hypothetical protein -
  NUG19_RS03995 rpsB 799173..799940 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  NUG19_RS04000 - 800139..800231 (-) 93 WP_001790530.1 hypothetical protein -
  NUG19_RS04005 codY 800282..801055 (-) 774 WP_042727647.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NUG19_RS04010 hslU 801080..802483 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  NUG19_RS04015 hslV 802549..803094 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  NUG19_RS04020 xerC 803091..803987 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  NUG19_RS04025 trmFO 804404..805711 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28785.16 Da        Isoelectric Point: 6.0680

>NTDB_id=752913 NUG19_RS04005 WP_042727647.1 800282..801055(-) (codY) [Staphylococcus aureus strain FDA209P]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESASVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752913 NUG19_RS04005 WP_042727647.1 800282..801055(-) (codY) [Staphylococcus aureus strain FDA209P]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTAGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424