Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NRK31_RS04005 Genome accession   NZ_CP123852
Coordinates   800281..801054 (-) Length   257 a.a.
NCBI ID   WP_042727647.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 5812R     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 795281..806054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK31_RS03970 - 795534..796304 (-) 771 WP_000473705.1 isoprenyl transferase -
  NRK31_RS03975 frr 796677..797231 (-) 555 WP_001280006.1 ribosome recycling factor -
  NRK31_RS03980 pyrH 797250..797972 (-) 723 WP_000057330.1 UMP kinase -
  NRK31_RS03985 tsf 798109..798990 (-) 882 WP_000201387.1 translation elongation factor Ts -
  NRK31_RS03990 - 799025..799138 (-) 114 WP_001789890.1 hypothetical protein -
  NRK31_RS03995 rpsB 799172..799939 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  NRK31_RS04000 - 800138..800230 (-) 93 WP_001790530.1 hypothetical protein -
  NRK31_RS04005 codY 800281..801054 (-) 774 WP_042727647.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NRK31_RS04010 hslU 801079..802482 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  NRK31_RS04015 hslV 802548..803093 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  NRK31_RS04020 xerC 803090..803986 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  NRK31_RS04025 trmFO 804403..805710 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28785.16 Da        Isoelectric Point: 6.0680

>NTDB_id=752824 NRK31_RS04005 WP_042727647.1 800281..801054(-) (codY) [Staphylococcus aureus strain 5812R]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESASVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752824 NRK31_RS04005 WP_042727647.1 800281..801054(-) (codY) [Staphylococcus aureus strain 5812R]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTAGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424