Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   OJ967_RS18820 Genome accession   NZ_CP110132
Coordinates   3920856..3923231 (-) Length   791 a.a.
NCBI ID   WP_264639119.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Q2H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3915856..3928231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ967_RS18805 (OJ967_18805) dtd 3917378..3917821 (-) 444 WP_053535817.1 D-aminoacyl-tRNA deacylase -
  OJ967_RS18810 (OJ967_18810) - 3917837..3920035 (-) 2199 WP_076365016.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  OJ967_RS18815 (OJ967_18815) - 3920353..3920865 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  OJ967_RS18820 (OJ967_18820) recJ 3920856..3923231 (-) 2376 WP_264639119.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OJ967_RS18825 (OJ967_18825) secDF 3923377..3925638 (-) 2262 WP_264639120.1 protein translocase subunit SecDF -
  OJ967_RS18830 (OJ967_18830) - 3925835..3926140 (-) 306 WP_034308797.1 post-transcriptional regulator -
  OJ967_RS18835 (OJ967_18835) spoVB 3926311..3927873 (+) 1563 WP_095678481.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88935.47 Da        Isoelectric Point: 4.8008

>NTDB_id=752597 OJ967_RS18820 WP_264639119.1 3920856..3923231(-) (recJ) [Peribacillus frigoritolerans strain Q2H1]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSTYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNMIAKEELNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIENELDAEQLDCFEGHLVLMDMPPS
REYLKRAVAKKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYGFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFDL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=752597 OJ967_RS18820 WP_264639119.1 3920856..3923231(-) (recJ) [Peribacillus frigoritolerans strain Q2H1]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGACGGCGTGACATCGACCACAGTGATGATGACCGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTCGATACCGGAATTTCCGCAGTCGCTGAAGCGAAGCTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACCGATCACCATGAACCTGGACCGCAGCTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGATAGTACCTATCCATTTAAAGACCTTGCCGGAGTAGGGGTCGCATTTAAGCTTGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTTGAAATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCACCGAGGATCAATGCTGTCGGCCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCCGCAAGTCTCGAAGAAGCAATGGAACTTGCTAATGAAATCAATGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGCCGTGAAATGCTGCCTCATTTCGGCGGACATCCTATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACATGATTGCGAAGGAAGAACTGAATGAAGAGGACTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAACTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAATCATCCAGATCTCG
TTCATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTACTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGCGGTTGCCAAAAAGAACCCTTCCCGTATCTACGCTCACCTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGGCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGATCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.729

100

0.549