Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OJ967_RS18465 Genome accession   NZ_CP110132
Coordinates   3842557..3844962 (-) Length   801 a.a.
NCBI ID   WP_249598452.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Q2H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3837557..3849962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ967_RS18440 (OJ967_18440) - 3839034..3840110 (-) 1077 WP_054400170.1 AI-2E family transporter -
  OJ967_RS18445 (OJ967_18445) - 3840337..3840552 (-) 216 WP_034311361.1 hypothetical protein -
  OJ967_RS18450 (OJ967_18450) - 3840542..3841000 (-) 459 WP_063575627.1 PRC-barrel domain-containing protein -
  OJ967_RS18455 (OJ967_18455) - 3841136..3841906 (-) 771 WP_264639077.1 YgcG family protein -
  OJ967_RS18460 (OJ967_18460) - 3841906..3842475 (-) 570 WP_371748455.1 LemA family protein -
  OJ967_RS18465 (OJ967_18465) recD2 3842557..3844962 (-) 2406 WP_249598452.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OJ967_RS18470 (OJ967_18470) - 3844999..3845664 (-) 666 WP_264639079.1 lipopolysaccharide assembly protein LapB -
  OJ967_RS18475 (OJ967_18475) mnmA 3845786..3846901 (-) 1116 WP_063575623.1 tRNA 2-thiouridine(34) synthase MnmA -
  OJ967_RS18480 (OJ967_18480) - 3846931..3848076 (-) 1146 WP_264639080.1 cysteine desulfurase family protein -
  OJ967_RS18485 (OJ967_18485) cymR 3848137..3848556 (-) 420 WP_034308657.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90541.26 Da        Isoelectric Point: 4.7971

>NTDB_id=752595 OJ967_RS18465 WP_249598452.1 3842557..3844962(-) (recD2) [Peribacillus frigoritolerans strain Q2H1]
MSQQDSLDLFSEEKKFMKGSHLVTIFHNEENMYSVVRIRVHETNLDYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGDKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTSKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=752595 OJ967_RS18465 WP_249598452.1 3842557..3844962(-) (recD2) [Peribacillus frigoritolerans strain Q2H1]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAAAGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGTGTGCATGAAACGAATCTGGATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTCCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGTATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGATAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTGCTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAGGGCCTCTATGATACATTAGTCGAGCATCAA
GGACTGGAGCAGGTGATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATTTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTAGAGGATATTGAAGGGATTGGGTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCACCCCGACCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCC
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTTTTGGAAGCGGTCAAACGGCTGCTAGAGGAAAATAA
ACGGGATCGCATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGCGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAACTGGAAGAGCGGCTGGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAGACAGCCTTGCAATCCCCGATGTTAATCTTGACTGGGGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAACTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTCCCCGC
AGTCACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGGTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAG
GTGATTTTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACCAATCAAATCCCCCAA
GTGATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGTCCAAAGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGCGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAGCAGGATTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCCATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAACGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATCTTGAGTGAAGAAGAAATGCCGGTTGAAAAGGGAGAGGTAC
ATCAAGAGGCAAGTTATCTTGATATTCTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(345-555)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.547

100

0.625