Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX60_RS05775 Genome accession   NZ_CP123748
Coordinates   1197356..1198129 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 1.2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192356..1203129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX60_RS05755 trmFO 1192700..1194007 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QFX60_RS05760 xerC 1194424..1195320 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX60_RS05765 hslV 1195317..1195862 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX60_RS05770 hslU 1195928..1197331 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX60_RS05775 codY 1197356..1198129 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX60_RS05780 - 1198180..1198272 (+) 93 WP_001790530.1 hypothetical protein -
  QFX60_RS05785 rpsB 1198471..1199238 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX60_RS05790 - 1199272..1199385 (+) 114 WP_001789890.1 hypothetical protein -
  QFX60_RS05795 tsf 1199420..1200301 (+) 882 WP_000201387.1 translation elongation factor Ts -
  QFX60_RS05800 pyrH 1200438..1201160 (+) 723 WP_000057330.1 UMP kinase -
  QFX60_RS05805 frr 1201179..1201733 (+) 555 WP_001280006.1 ribosome recycling factor -
  QFX60_RS05810 - 1202106..1202876 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=752412 QFX60_RS05775 WP_000055337.1 1197356..1198129(+) (codY) [Staphylococcus aureus strain 1.2]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=752412 QFX60_RS05775 WP_000055337.1 1197356..1198129(+) (codY) [Staphylococcus aureus strain 1.2]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428