Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OKV75_RS09430 Genome accession   NZ_CP110109
Coordinates   1901008..1901787 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain TG-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896008..1906787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS09405 uppS 1896756..1897532 (-) 777 WP_000971297.1 isoprenyl transferase -
  OKV75_RS09410 frr 1897618..1898175 (-) 558 WP_000531505.1 ribosome recycling factor -
  OKV75_RS09415 pyrH 1898178..1898900 (-) 723 WP_000042669.1 UMP kinase -
  OKV75_RS09420 tsf 1898967..1899854 (-) 888 WP_001018577.1 translation elongation factor Ts -
  OKV75_RS09425 rpsB 1899958..1900659 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  OKV75_RS09430 codY 1901008..1901787 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OKV75_RS09435 hslU 1901865..1903256 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  OKV75_RS09440 hslV 1903279..1903821 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  OKV75_RS09445 xerC 1903864..1904763 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  OKV75_RS09450 trmFO 1904829..1906133 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=752362 OKV75_RS09430 WP_000421290.1 1901008..1901787(-) (codY) [Bacillus thuringiensis strain TG-5]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=752362 OKV75_RS09430 WP_000421290.1 1901008..1901787(-) (codY) [Bacillus thuringiensis strain TG-5]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459